Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_H07
(893 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 32 0.54
07_03_1136 + 24218601-24218734,24218769-24219906 31 1.2
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 2.2
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.8
03_05_0267 - 22538631-22539452 29 5.0
12_01_0167 - 1250619-1250699,1250824-1250910,1250992-1251110,125... 28 8.7
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 8.7
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.7
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 8.7
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 32.3 bits (70), Expect = 0.54
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 342 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVGG 178
H P AAA P VP++ P L + GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 31.1 bits (67), Expect = 1.2
Identities = 25/83 (30%), Positives = 25/83 (30%)
Frame = -2
Query: 886 PPAXXGXXXXXXKXRGXPGTXGWGXXGXGGKAXXXXQXRGPPGRXRXRXXGRXPGAXXPE 707
PP G G G G GG R PPG R GR PG
Sbjct: 121 PPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGGGALAR-PPGGGRGGALGRPPGGGGGG 179
Query: 706 XXXGXCPPGLPXXXRPGWAPXXG 638
G P G PG AP G
Sbjct: 180 GGPGRAPGGGGGGGGPGRAPGGG 202
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 240 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 356
V+ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 255 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 166
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>03_05_0267 - 22538631-22539452
Length = 273
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/57 (31%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Frame = +3
Query: 675 GSPGGQXPXCXSGXXAPGXRPXXRXRXRPGG-PRXWXXXXAXPPXPXXPHPXVPGXP 842
GS G+ SG G P R R P PR W + PP P P P
Sbjct: 146 GSSDGEGCGDGSGGGELGGGPTVRRRASPPARPRWWPCSPSSPPASPSPSPARTSPP 202
>12_01_0167 -
1250619-1250699,1250824-1250910,1250992-1251110,
1251200-1251478,1252246-1252660
Length = 326
Score = 28.3 bits (60), Expect = 8.7
Identities = 22/78 (28%), Positives = 36/78 (46%)
Frame = +1
Query: 355 LWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISMQXRXXAQRHADLHVQ 534
LW V++ N T Y L+A+ S N V+++ L++ + + Q H L
Sbjct: 68 LWYIPVMISNVGNFTLQMY-LQAQ-SKNMIVTYLAMLNLGLHLFLSWLLTVQFHLGL--- 122
Query: 535 VRVLGCTILTKWISVIDK 588
V+G ++ WI V DK
Sbjct: 123 AGVMGSMVIAYWIPVFDK 140
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 127 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 282
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 424 GRGERSPRRWLQPRLAVPRQASTSVPRTP 338
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -3
Query: 369 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 202
++PP H + AP P +P+ S P++ + PH S +QM Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,859,416
Number of Sequences: 37544
Number of extensions: 557760
Number of successful extensions: 1607
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1600
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -