Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_H06
(930 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0118 + 14597863-14597929,14598844-14599806,14599909-145999... 34 0.14
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 34 0.19
07_03_1136 + 24218601-24218734,24218769-24219906 33 0.32
12_01_0524 - 4167867-4168445 29 4.0
02_02_0707 + 13144147-13144788,13145115-13148663 29 4.0
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 29 7.0
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 28 9.2
07_01_0809 - 6347986-6348048,6348460-6348571,6348956-6349041 28 9.2
01_01_0570 - 4231100-4232560 28 9.2
>03_03_0118 +
14597863-14597929,14598844-14599806,14599909-14599936,
14600288-14600666
Length = 478
Score = 34.3 bits (75), Expect = 0.14
Identities = 17/42 (40%), Positives = 18/42 (42%)
Frame = +3
Query: 615 PXXGTVGMXTGFLSPVXGQXPGPLGXGGXPXVGIGPXXXFSG 740
P GT GF P G PLG G P G GP F+G
Sbjct: 393 PAAGTTPPAGGFTPPAGGFGTPPLGGFGTPPSGFGPPGSFNG 434
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 33.9 bits (74), Expect = 0.19
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -3
Query: 343 HQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 179
H P AAA P VP++ P L + S GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 33.1 bits (72), Expect = 0.32
Identities = 26/76 (34%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Frame = +3
Query: 651 LSPVXGQXPGPLGXGGXPXVGIGPXXXFSGXTXPXXXGPXGAAXRXSXXGAXGPGXP--- 821
L P G PGPLG GG G G + P G G A + G G G P
Sbjct: 90 LPPGGGGAPGPLGGGGARPPGGGGGG--GPPSLPPGAGGGGGARPPAPGGGGGGGAPRRV 147
Query: 822 XGGXXGLXXXXRXXGG 869
GG G R GG
Sbjct: 148 LGGGGGGGALARPPGG 163
Score = 31.9 bits (69), Expect = 0.75
Identities = 22/67 (32%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Frame = +3
Query: 675 PGPLGXGGXPXVGIGPXXXFSGXTXPXXXGPXGAAXR--XSXXGAXGPGXPXGGXXGLXX 848
PG G GG P +G P G GA R G GPG GG G
Sbjct: 135 PGGGGGGGAPRRVLGGGGGGGALARPPGGGRGGALGRPPGGGGGGGGPGRAPGGGGGGGG 194
Query: 849 XXRXXGG 869
R GG
Sbjct: 195 PGRAPGG 201
>12_01_0524 - 4167867-4168445
Length = 192
Score = 29.5 bits (63), Expect = 4.0
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -3
Query: 340 QPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 161
QPS+AA P + + + + YSH G + S + G + G GGG P V
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160
Query: 160 CEERVDHEGQ*C 125
EE + E + C
Sbjct: 161 VEEVEEEEEKEC 172
>02_02_0707 + 13144147-13144788,13145115-13148663
Length = 1396
Score = 29.5 bits (63), Expect = 4.0
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -2
Query: 455 RRRSRYLDTRAAESVVPRRWLQPRLAVPRQASTSVPRTPAKCCS 324
RRR+ DTR V P +L+P L V R T P T A S
Sbjct: 50 RRRAASWDTRQWRDVEPLLYLRPFLDVVRSDETGAPITGAALSS 93
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 28.7 bits (61), Expect = 7.0
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 241 VRVHRANTGRSSNELDRQTTELERRGVGLQHLAGVLGTL 357
V+ H R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 28.3 bits (60), Expect = 9.2
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +1
Query: 247 VHRANTGRSSNELDRQTTELERRGVG 324
V+ A +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396
>07_01_0809 - 6347986-6348048,6348460-6348571,6348956-6349041
Length = 86
Score = 28.3 bits (60), Expect = 9.2
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = -2
Query: 422 AESVVPRRWLQPRLAVPRQASTSVPRTPAKCCSPTPLRSNSVVCRSNSFED 270
AE+ VP ++P+++ + S + CCS +++ C FED
Sbjct: 2 AETSVPNLGMKPKIS--ERTSNTKATMGTSCCSYNTCEDSTIKCTMTQFED 50
>01_01_0570 - 4231100-4232560
Length = 486
Score = 28.3 bits (60), Expect = 9.2
Identities = 24/82 (29%), Positives = 25/82 (30%)
Frame = +3
Query: 624 GTVGMXTGFLSPVXGQXPGPLGXGGXPXVGIGPXXXFSGXTXPXXXGPXGAAXRXSXXGA 803
GT G G L G G G GG G+G F G G GA
Sbjct: 78 GTGGGAAGGLGGGGGGGGGLGGSGGLGGGGMGGSGGFGGGGGGGVGGGVGAGFGSGGGVG 137
Query: 804 XGPGXPXGGXXGLXXXXRXXGG 869
G G GG G GG
Sbjct: 138 AGGGLRGGGGVGAGGGGGFGGG 159
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,707,254
Number of Sequences: 37544
Number of extensions: 533105
Number of successful extensions: 1424
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1421
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2659245980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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