Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_H03
(907 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual 28 1.6
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|... 28 2.1
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|... 27 2.8
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster... 27 2.8
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb... 27 3.7
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 27 4.8
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 26 6.4
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ... 26 8.5
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 26 8.5
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 26 8.5
>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 28.3 bits (60), Expect = 1.6
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +3
Query: 141 PRIPPPTDRLLPRGQVDPVHRTRWGDVPLPRRARCSAGGPSWAPCCGTSATTGSCGASFG 320
PR+PPP+ R G + + G + L SA ++AP G TG+ S+G
Sbjct: 42 PRMPPPSTRPQTDGNSNQIPMENVGHISL-----SSANSHAYAPPSGPPPNTGA--NSYG 94
Query: 321 DPS 329
+P+
Sbjct: 95 NPN 97
>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 342
Score = 27.9 bits (59), Expect = 2.1
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = -2
Query: 528 HPEAALVPARETTGPGFCRAPPSSPSRLILVTMCATPAH---ARRADSR*SLPGATTNVS 358
+P +P + G P +PS L V+ ATP H + R DS SL T + S
Sbjct: 255 NPSKQALPIDQKNGSHASSVAPGTPSSLASVSTQATPQHQNSSGRTDSFHSLNTETPSKS 314
Query: 357 SV 352
+V
Sbjct: 315 TV 316
>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
3|||Manual
Length = 834
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 439 CDDVCHACARQTGRLPVVPPRSYDQRVVSVTNYAE 335
C ++C+ AR T + +VPP Y V ++ Y +
Sbjct: 764 CYNLCYVYARATSAVSLVPPVYYAHLVSNLARYQD 798
>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -3
Query: 614 NEREVHDIIQPSTETVTRPDADASDHEVGTQRRRSSRPVKQQGLGFVE 471
NE+ V + +P + +TR + D+S H+ R + K Q GFV+
Sbjct: 49 NEQAVQLLEEPLSRPITR-ETDSSAHQETRTRLEENNLPKTQKFGFVD 95
>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 478
Score = 27.1 bits (57), Expect = 3.7
Identities = 16/55 (29%), Positives = 20/55 (36%)
Frame = -2
Query: 573 DRHPTRRGRLRSRGGHPEAALVPARETTGPGFCRAPPSSPSRLILVTMCATPAHA 409
D P R R+R HP + P + P S+PS V A A A
Sbjct: 230 DLRPLSDSRRRARRPHPSDTIPPGASMARSDPSQVPESNPSAAAAVAAAAVAAAA 284
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 26.6 bits (56), Expect = 4.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 609 ARSPRHHSAEYRDRHPTRRGRLRSRG 532
A S RH S + D P+ + L+SRG
Sbjct: 112 ASSSRHRSPSHNDSSPSTQSSLKSRG 137
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Frame = -3
Query: 626 RPXANEREVHD--IIQPSTETVTRPDADASDHEVGTQRRRSSRPVKQQG 486
+P +E H ++P VT+PD HE + RPV G
Sbjct: 362 KPWKHEEHCHHGKFLRPVPHNVTKPDHKPWKHEEHCHHGKFPRPVPHNG 410
>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 395 ESARLACAGVAHIVTRIKRLGLEGGARQNPGPVVSRAGTSAAS 523
E + + +++I+ + ++ L G A + G + SRAGTS S
Sbjct: 320 ECTYVMISALSYIMQEVTKIFLGGHAMLSNGALYSRAGTSLIS 362
>SPAC20G8.04c |||mitochondrial electron transfer
flavoprotein-ubiquinone
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 25.8 bits (54), Expect = 8.5
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = -1
Query: 370 DQRVVSVTNYAEPGEGSPNDAPQDPVVADVPQQGAQDGPP 251
D RVV + AEPG S + A P D +D PP
Sbjct: 119 DIRVVVLEKAAEPGNHSVSGAVIQPTALDELLPNWRDDPP 158
>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 594
Score = 25.8 bits (54), Expect = 8.5
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +2
Query: 329 PGLSVICYTDDTLVVAPGRDYRESARLACAGVAHIVTRIKRLGLEGGARQNPGPVVSRAG 508
PGLS I ++ Y S +ACA V + V + GGA PV+ +G
Sbjct: 46 PGLSEIGCCNELNCAFAAEGYARSNGIACAVVTYSVGALTAFDGIGGAYAENLPVILVSG 105
Query: 509 T 511
+
Sbjct: 106 S 106
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,926,055
Number of Sequences: 5004
Number of extensions: 64048
Number of successful extensions: 182
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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