Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_H02
         (947 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    27   5.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   6.7  
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ...    26   8.9  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 252 HRADTGRSSNELDRQTTXLERR 317
           H+   GR+  ELDR+ T L++R
Sbjct: 21  HQRSLGRAERELDRERTKLDQR 42


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
 Frame = +3

Query: 576  PXXPXGXPGXXPPXX--SXXVPPXSAPXGXXXXRAPSXVP 689
            P    G P   PP    S  +P   AP G     APS +P
Sbjct: 1053 PKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIP 1092


>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 448

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 5   GFTRDSFNRSVVIKCRRLILFLLPVSPHLCYS 100
           GF RD FN    I C  L+ F   +  + C++
Sbjct: 411 GFLRDQFNFITSIACLSLLCFSASLMANSCFT 442


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,099,886
Number of Sequences: 5004
Number of extensions: 30614
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)