Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_H02
         (947 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.76 
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.76 
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.76 
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.76 
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.76 
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.76 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.76 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.76 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   2.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.0  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   9.3  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.76
 Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 274 LQMNWIDKRLXWNAGXWGCSXXL-VSSERXWQ 366
           L++ W+D  L WN   +G    L ++  + W+
Sbjct: 39  LKLEWVDYNLQWNESEYGGVKDLRITPNKLWK 70


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.76
 Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 274 LQMNWIDKRLXWNAGXWGCSXXL-VSSERXWQ 366
           L++ W+D  L WN   +G    L ++  + W+
Sbjct: 39  LKLEWVDYNLQWNESEYGGVKDLRITPNKLWK 70


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.76
 Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 274 LQMNWIDKRLXWNAGXWGCSXXL-VSSERXWQ 366
           L++ W+D  L WN   +G    L ++  + W+
Sbjct: 39  LKLEWVDYNLQWNESEYGGVKDLRITPNKLWK 70


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.76
 Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 274 LQMNWIDKRLXWNAGXWGCSXXL-VSSERXWQ 366
           L++ W+D  L WN   +G    L ++  + W+
Sbjct: 39  LKLEWVDYNLQWNESEYGGVKDLRITPNKLWK 70


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.76
 Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 274 LQMNWIDKRLXWNAGXWGCSXXL-VSSERXWQ 366
           L++ W+D  L WN   +G    L ++  + W+
Sbjct: 39  LKLEWVDYNLQWNESEYGGVKDLRITPNKLWK 70


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.76
 Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 274 LQMNWIDKRLXWNAGXWGCSXXL-VSSERXWQ 366
           L++ W+D  L WN   +G    L ++  + W+
Sbjct: 39  LKLEWVDYNLQWNESEYGGVKDLRITPNKLWK 70


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.4 bits (53), Expect = 0.76
 Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 274 LQMNWIDKRLXWNAGXWGCSXXL-VSSERXWQ 366
           L++ W+D  L WN   +G    L ++  + W+
Sbjct: 107 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWK 138


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.4 bits (53), Expect = 0.76
 Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 274 LQMNWIDKRLXWNAGXWGCSXXL-VSSERXWQ 366
           L++ W+D  L WN   +G    L ++  + W+
Sbjct: 107 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWK 138


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +1

Query: 274 LQMNWIDKRLXWNAGXWGCSXXL-VSSERXW 363
           ++  W D +L WN   +G    L V SE  W
Sbjct: 73  VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIW 103


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +1

Query: 274 LQMNWIDKRLXWNAGXWGCSXXL-VSSERXW 363
           ++  W D +L WN   +G    L V SE  W
Sbjct: 86  VEQRWNDYKLKWNPEEYGGVEMLYVPSENIW 116


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = +1

Query: 274 LQMNWIDKRLXWNAGXWGCSXXL-VSSERXWQ 366
           L++ W D  + WN   +G    L +   R W+
Sbjct: 76  LKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWK 107


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 346 TPXKXCSPXPLRSXSVVCRSNSFED 272
           TP +  +  PL +  V CR+N  E+
Sbjct: 26  TPRRKKNKKPLPTECVFCRNNGEEE 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,544
Number of Sequences: 438
Number of extensions: 3045
Number of successful extensions: 18
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31081323
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)