Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_H01
(886 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 32 0.53
07_03_1747 + 29188568-29188715,29188793-29189541 31 0.93
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 2.1
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.8
11_03_0181 - 11301759-11301838,11302294-11303095 29 6.6
07_03_1136 + 24218601-24218734,24218769-24219906 29 6.6
12_02_0507 + 19810446-19811048,19811220-19811466,19811590-198121... 28 8.7
11_01_0638 + 5106962-5107553,5108107-5108303,5108955-5110196 28 8.7
08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149 28 8.7
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 8.7
06_03_0228 - 18439659-18440900,18441212-18441736,18441813-184421... 28 8.7
04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789 28 8.7
04_03_0328 + 14440877-14441479,14441650-14441955,14442032-14442637 28 8.7
04_03_0101 - 11242252-11243295,11243607-11244131,11244208-112445... 28 8.7
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.7
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 8.7
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 32.3 bits (70), Expect = 0.53
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -1
Query: 313 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVGG 149
H P AAA P VP++ P L + GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 31.5 bits (68), Expect = 0.93
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +3
Query: 366 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCXLARSSSVLG 518
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 211 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 327
V+ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 226 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 137
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>11_03_0181 - 11301759-11301838,11302294-11303095
Length = 293
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -3
Query: 641 FPLATVWVXPXWTDPSHPTLLXRTYXI 561
FP W P W+ S PT+L T+ +
Sbjct: 230 FPHVKCWTSPVWSATSRPTVLLSTWQV 256
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -2
Query: 792 PPXXGGXXGRXARXAGGGRXRGXPGXNTG 706
PP GG G R GGG G PG G
Sbjct: 172 PPGGGGGGGGPGRAPGGGGGGGGPGRAPG 200
>12_02_0507 +
19810446-19811048,19811220-19811466,19811590-19812125,
19812397-19813620
Length = 869
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -2
Query: 792 PPXXGGXXGRXARXAGGGRXRG 727
PP GG GR GGGR RG
Sbjct: 96 PPAAGGGRGRSRGGRGGGRGRG 117
>11_01_0638 + 5106962-5107553,5108107-5108303,5108955-5110196
Length = 676
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -2
Query: 792 PPXXGGXXGRXARXAGGGRXRG 727
PP GG GR GGGR RG
Sbjct: 96 PPAAGGGRGRSRGGRGGGRGRG 117
>08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149
Length = 916
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -2
Query: 792 PPXXGGXXGRXARXAGGGRXRG 727
PP GG GR GGGR RG
Sbjct: 96 PPAAGGGRGRSRGGRGGGRGRG 117
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 98 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 253
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>06_03_0228 -
18439659-18440900,18441212-18441736,18441813-18442118,
18442290-18442877
Length = 886
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -2
Query: 792 PPXXGGXXGRXARXAGGGRXRG 727
PP GG GR GGGR RG
Sbjct: 91 PPAAGGGRGRSRGGRGGGRGRG 112
>04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789
Length = 877
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -2
Query: 792 PPXXGGXXGRXARXAGGGRXRG 727
PP GG GR GGGR RG
Sbjct: 87 PPAAGGGRGRSRGGRGGGRGRG 108
>04_03_0328 + 14440877-14441479,14441650-14441955,14442032-14442637
Length = 504
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -2
Query: 792 PPXXGGXXGRXARXAGGGRXRG 727
PP GG GR GGGR RG
Sbjct: 96 PPAAGGGRGRSRGGRGGGRGRG 117
>04_03_0101 -
11242252-11243295,11243607-11244131,11244208-11244513,
11244692-11245231
Length = 804
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -2
Query: 792 PPXXGGXXGRXARXAGGGRXRG 727
PP GG GR GGGR RG
Sbjct: 75 PPAAGGGRGRSRGGRGGGRGRG 96
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 395 GRGERSPRRWLQPRLAVPRQASTSVPRTP 309
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -1
Query: 340 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 173
++PP H + AP P +P+ S P++ + PH S +QM Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,020,365
Number of Sequences: 37544
Number of extensions: 494902
Number of successful extensions: 1555
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1550
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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