Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_G22
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   147   2e-36
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   146   3e-36
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.5  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   5.7  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    26   7.6  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  147 bits (356), Expect = 2e-36
 Identities = 76/158 (48%), Positives = 94/158 (59%), Gaps = 1/158 (0%)
 Frame = +3

Query: 363 RGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIP 542
           + AFGNMCR GRMFAPTK WR+WH                          ARGH IE+IP
Sbjct: 89  QAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIP 148

Query: 543 ELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP- 719
           E+PLVV D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR +QR+GP 
Sbjct: 149 EVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPL 208

Query: 720 S*SSTRIRV*LAPSEHPGCGXPECYKLNLLXLAPGGHL 833
              +    +  A    PG       +LNLL LAPGGHL
Sbjct: 209 VVFNEDTGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHL 246



 Score =  125 bits (302), Expect = 7e-30
 Identities = 58/82 (70%), Positives = 67/82 (81%)
 Frame = +2

Query: 119 SVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESW 298
           S+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESW
Sbjct: 9   SIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESW 67

Query: 299 GTGRAVARIPRVRGGGTHRSGQ 364
           GTGRA+ARIPRV GGGTHRSGQ
Sbjct: 68  GTGRALARIPRVGGGGTHRSGQ 89


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  146 bits (355), Expect = 3e-36
 Identities = 76/158 (48%), Positives = 94/158 (59%), Gaps = 1/158 (0%)
 Frame = +3

Query: 363 RGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIP 542
           + AFGNMCR GRMFAPTK WR+WH                          ARGH IE+IP
Sbjct: 89  QAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIEEIP 148

Query: 543 ELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP- 719
           E+PLVV D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR +QR+GP 
Sbjct: 149 EVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPL 208

Query: 720 S*SSTRIRV*LAPSEHPGCGXPECYKLNLLXLAPGGHL 833
              +    +  A    PG       +LNLL LAPGGHL
Sbjct: 209 VVFNEDAGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHL 246



 Score =  126 bits (304), Expect = 4e-30
 Identities = 59/82 (71%), Positives = 67/82 (81%)
 Frame = +2

Query: 119 SVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESW 298
           S+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESW
Sbjct: 9   SIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESW 67

Query: 299 GTGRAVARIPRVRGGGTHRSGQ 364
           GTGRA+ARIPRV GGGTHRSGQ
Sbjct: 68  GTGRALARIPRVGGGGTHRSGQ 89


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 367 PLTGPMSTTTTDTRNSGDSTSSTP*FSTGLVTS 269
           P+T P ST+++ T+ S +ST+     ST  VTS
Sbjct: 603 PITSPNSTSSSSTQVSWNSTTPITGTSTSKVTS 635


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -1

Query: 382 MLPKAPLTGPMSTTTTDTRNSGDSTSSTP*FSTGLVTSLLAHAVGLPRVLGHRNVNII 209
           +LP A +T PM  TTT      + T++TP   T ++T ++        V+G   V+ I
Sbjct: 192 ILPMAAMTTPMEETTTTPM---EETTTTPMVET-MITPMVEAMTTPTEVVGRSMVSTI 245


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = -1

Query: 112 KVG-LPIDSFRYFSEAIPLKY-TLIAVI 35
           K+G LP+ SF Y +  +PL Y TL+AV+
Sbjct: 186 KLGYLPVPSFIYSTGELPLSYPTLLAVL 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,275,067
Number of Sequences: 5004
Number of extensions: 62401
Number of successful extensions: 173
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)