Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_G22
(835 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 140 2e-33
07_01_0578 + 4295386-4296489,4297394-4297507 138 4e-33
08_02_1278 - 25838146-25839411 32 0.65
10_02_0199 + 6668902-6669293,6669825-6669882 31 1.5
03_05_0366 - 23505755-23506441 30 2.0
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 30 2.6
09_02_0254 - 6334767-6335465 29 6.0
06_01_0017 + 189346-189561,189614-189905,190024-190043 29 6.0
05_04_0292 + 19893895-19894983 29 6.0
03_03_0266 - 16014740-16015045,16015566-16015601,16015623-160156... 29 6.0
07_01_0380 - 2834080-2834451,2835945-2836130 28 8.0
07_01_0354 + 2578676-2578753,2578871-2578951,2579070-2579312 28 8.0
03_05_0670 - 26594292-26594785,26595222-26595531 28 8.0
02_04_0457 + 23093020-23093343,23093798-23093806 28 8.0
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 140 bits (338), Expect = 2e-33
Identities = 75/159 (47%), Positives = 91/159 (57%), Gaps = 2/159 (1%)
Frame = +3
Query: 363 RGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIP 542
+GAFGNMCRGGRMFAPTK WRRWH ARGH IE +P
Sbjct: 92 QGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAATAVPSLVLARGHRIEGVP 151
Query: 543 ELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP- 719
E PLVV+D ++ I KT Q++ L+++ A++D K S +RAGKGKMRNRR I RKGP
Sbjct: 152 EFPLVVSDSIESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGKGKMRNRRYINRKGPL 211
Query: 720 -S*SSTRIRV*LAPSEHPGCGXPECYKLNLLXLAPGGHL 833
+ +V A PG +LNLL LAPGGHL
Sbjct: 212 IVYGTEGSKVVKAFRNLPGVDVANVERLNLLDLAPGGHL 250
Score = 107 bits (258), Expect = 8e-24
Identities = 50/79 (63%), Positives = 57/79 (72%)
Frame = +2
Query: 131 EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGR 310
E A +P V +APIRPD+V H +S N RQPY VS+ AGHQTSAESWGTGR
Sbjct: 15 EGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTGR 74
Query: 311 AVARIPRVRGGGTHRSGQG 367
AV+RIPRV GGGTHR+GQG
Sbjct: 75 AVSRIPRVPGGGTHRAGQG 93
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 138 bits (335), Expect = 4e-33
Identities = 73/159 (45%), Positives = 90/159 (56%), Gaps = 2/159 (1%)
Frame = +3
Query: 363 RGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIP 542
+GAFGNMCRGGRMFAPTK WR+WH ARGH IE +P
Sbjct: 93 QGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIETVP 152
Query: 543 ELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP- 719
ELPLV++D + I KT QA+ L+++ A++D K S +R GKGKMRNRR I RKGP
Sbjct: 153 ELPLVISDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKGPL 212
Query: 720 -S*SSTRIRV*LAPSEHPGCGXPECYKLNLLXLAPGGHL 833
+ ++ A PG +LNLL LAPGGHL
Sbjct: 213 IVYGTEGSKIVKAFRNLPGVDVANVERLNLLDLAPGGHL 251
Score = 108 bits (260), Expect = 5e-24
Identities = 50/75 (66%), Positives = 59/75 (78%)
Frame = +2
Query: 143 TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVAR 322
T ++ L VF+AP+RPD+V VH +S N RQPY VS+ AGHQTSAESWGTGRAV+R
Sbjct: 20 TDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSR 79
Query: 323 IPRVRGGGTHRSGQG 367
IPRV GGGTHR+GQG
Sbjct: 80 IPRVPGGGTHRAGQG 94
>08_02_1278 - 25838146-25839411
Length = 421
Score = 31.9 bits (69), Expect = 0.65
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = -3
Query: 617 APQEDDSLFGLVDLLDFVGYNQGKLGNLFNNVSSSL 510
A +E LF L+D+LD V +G+L LF+ S++L
Sbjct: 89 AAREPQRLFRLLDMLDAVARERGRLDELFSGESATL 124
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 287 AESWGTGRAVARIPRVRGGGTHR 355
A+SW TGRA A + R R GG R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRR 58
>03_05_0366 - 23505755-23506441
Length = 228
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +2
Query: 173 FVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 349
++ AP D +V S + R P C S E + +AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 350 H 352
+
Sbjct: 168 N 168
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = -3
Query: 365 PDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 264
P + +HHHGH + Q H G PP
Sbjct: 33 PQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPPPP 66
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -3
Query: 362 DRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 264
D +HHH H G H Q QH PP
Sbjct: 32 DPQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPP 64
>09_02_0254 - 6334767-6335465
Length = 232
Score = 28.7 bits (61), Expect = 6.0
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -1
Query: 394 PPRHMLPKAPLT--GPMSTTTTDTRNSGDSTSSTP*FSTGLVTSLLA 260
PP P+ P P +T TT T +SGDS S L+ SLLA
Sbjct: 173 PPTPPPPEKPAAERSPSTTPTTTTEDSGDSRILIECCSDDLMDSLLA 219
>06_01_0017 + 189346-189561,189614-189905,190024-190043
Length = 175
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -3
Query: 530 NNVSSSLNERWDAGSSNGCRQGR--SPLSEVDATVPTP 423
N+ +S L+ +WDAGS + SPLS V A P
Sbjct: 103 NDSTSKLSFKWDAGSCSSASSSAMYSPLSAVSAPAKAP 140
>05_04_0292 + 19893895-19894983
Length = 362
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = -3
Query: 203 GPDGWAP*TRTGGAWLHPAPSHSSLNTLTXKGRATDRLISL-L*RSYTSEIYTNSGDKDH 27
G D WAP GG LHP H++ + + R +L + + + KDH
Sbjct: 211 GADSWAPLRVAGGIPLHPGFVHATRSKSELEPRPDSVFFTLDMLDKFLAMALPEGATKDH 270
Query: 26 P 24
P
Sbjct: 271 P 271
>03_03_0266 -
16014740-16015045,16015566-16015601,16015623-16015643,
16016331-16016591,16017504-16018985,16019834-16019989,
16020154-16020277,16020399-16020615,16020877-16021774,
16022947-16023291,16023371-16023565,16023751-16024453,
16024866-16025467
Length = 1781
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 379 LPKAPLTGPMSTTTTDTRNSGDSTSST 299
LP+ PL P++ D+R++ DS+ ST
Sbjct: 657 LPEIPLESPLTVALPDSRSTADSSIST 683
>07_01_0380 - 2834080-2834451,2835945-2836130
Length = 185
Score = 28.3 bits (60), Expect = 8.0
Identities = 26/77 (33%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Frame = +2
Query: 275 HQ-TSAESWGTGRAVARIPRVRGGGTHRSGQGCLR*HVSWWTYVRPH---EALAALAPSR 442
HQ S+ G A AR V G + SG G V P +A AA AP+
Sbjct: 92 HQGESSSGGGVSTAAARHCDVAGSSSSHSGSGSGSATPPRPALVSPRAGLQAAAAAAPTM 151
Query: 443 QPPTAESGLGGSRCCYR 493
P A SGL R R
Sbjct: 152 NQPPAASGLSMKRSLQR 168
>07_01_0354 + 2578676-2578753,2578871-2578951,2579070-2579312
Length = 133
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -1
Query: 334 DTRNSGDSTSSTP*FSTG--LVTSLLAHAVGLPRVLGHRNVNIIDQV 200
+ R+SG T F+ L + H +G+ VLG +N+ ++DQ+
Sbjct: 85 EARDSGLQTGDPAGFTLADTLACGAVGHIMGVGVVLGLKNIGVLDQI 131
>03_05_0670 - 26594292-26594785,26595222-26595531
Length = 267
Score = 28.3 bits (60), Expect = 8.0
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +2
Query: 332 VRGGGTHRSGQGCLR*HVSWWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSAR 508
V GGG G G R W +RP +LAA+ P+ P E G + RR +R
Sbjct: 10 VSGGG---GGSGLTR---RWRRQIRPPRSLAAVDPAPSSPRGERRQGEEKADRRRLRSR 62
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +2
Query: 272 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQG 367
G + S W G A A VRGGG RSG G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGG 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,593,929
Number of Sequences: 37544
Number of extensions: 537639
Number of successful extensions: 1724
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1716
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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