Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_G06
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po...    28   2.1  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      27   2.7  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   4.8  
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    27   4.8  
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo...    26   8.4  

>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 433

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 252 ISQQFPSQASTLPISGKFQAHVNRHQQFPSQASTLPI 362
           I +++PS  S  P+    QA VN H  + + A++L +
Sbjct: 126 IRKKYPSLFSNSPLRSDMQAVVNEHAGYANSAASLKL 162


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +3

Query: 297 GKFQAHVNRHQQFPSQASTLPISGKFQAHDINNQQSQLVPGFCA 428
           GKF  H++ H+QF  +        + QA  INN        FCA
Sbjct: 302 GKFYCHLDYHEQFSPRCKHCKTPIEDQAVHINNDWFHENHHFCA 345


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 823  ISVTSFNFY-PYQVIPAHVTGHQEF 894
            IS ++F+F  PY VIP+ +TG   F
Sbjct: 958  ISKSNFDFRRPYSVIPSRMTGRSSF 982


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = +2

Query: 668 GNRHQQFPSQASTLPISGKFQAHDINNQQSQLVPGFCA*HGFHQFSRFISQQFR 829
           G R+Q F S  S  P S           Q    P     HG++ FSR +SQQ +
Sbjct: 174 GGRYQGFGSSNSVNPNSSARNNGGSFLDQLSSNPVSALSHGWNMFSRSVSQQIQ 227


>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 400

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +1

Query: 229 GFHQFSRLYLSNFRHKLQLYPYQVNSKLM*T---AISNFRHKLQLY 357
           GF+ F +  LS+F  KLQL    V  K M     + S F   LQLY
Sbjct: 317 GFNNFGQNILSSFVRKLQLEICYVLQKFMPNVKDSTSKFSLLLQLY 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,659,951
Number of Sequences: 5004
Number of extensions: 76986
Number of successful extensions: 175
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)