Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_G03
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    74   1e-13
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    64   1e-10
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    58   8e-09
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    51   1e-06
AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical ...    43   3e-04

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 60/208 (28%), Positives = 97/208 (46%), Gaps = 2/208 (0%)
 Frame = +3

Query: 78  TAGVPQGSALSPLLFSLYINDIPRSPETHLAL--FADDTAIYYSCRKMSLLHRRLQIAVA 251
           T GVPQG+ LSPLLF +Y+NDI       +A   FADDT +Y S  K       LQ A+ 
Sbjct: 74  TCGVPQGAVLSPLLFGIYVNDISSILPEKVACKQFADDTKLYASTPKTE-SENNLQSALD 132

Query: 252 TLGQWFRKWRIDINPTKSAAVLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPWV 431
            +  W +  ++ +N +K              T  + +  RR +        L G PI   
Sbjct: 133 AVVDWTKGSKLTLNQSK--------------TVHVTVGKRRIDFK----YHLDGYPIERK 174

Query: 432 SKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKTCIRPV 611
           +  + LG  +   + F  H +   + A F L  ++    + +K   +  + LYKT IRP 
Sbjct: 175 AITRDLGFLISEKLDFSDHWRKCINLAKFQLANMFNKYSTSNK---KLMILLYKTFIRPR 231

Query: 612 MTYASVVFAHAARTHLKSLQVIQSRFCR 695
           + Y +VV +   ++  K+++ +Q+ F R
Sbjct: 232 LEYGTVVSSPTKKSDEKTIESVQNAFTR 259


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
            protein F21E9.1 protein.
          Length = 1170

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 2/190 (1%)
 Frame = +3

Query: 75   LTAGVPQGSALSPLLFSLYIND--IPRSPETHLALFADDTAIYYSCRKMSLLHRRLQIAV 248
            +++GVPQGS   PLLF L+IN+  I  +P  +++ FADD  I+++    +++   + I V
Sbjct: 877  ISSGVPQGSVSGPLLFILFINNLLIDLAPTINISCFADDVKIFHT--DPTIIQNSIDIIV 934

Query: 249  ATLGQWFRKWRIDINPTKSAAVLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPW 428
            +    W +   + + PTKSA               + L +R  N S     ++ G PI  
Sbjct: 935  S----WSKLNELPLAPTKSAL--------------LALGTRNKNQS----YSVDGVPITP 972

Query: 429  VSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKTCIRP 608
             S V+ LG+  D  + F  HI  V   +   + R   +L + S  S +    LYKT + P
Sbjct: 973  SSTVRDLGLITDCKLKFEHHIVKV---SCLAMLRSKQILKAFSSNSPKFYAHLYKTYVAP 1029

Query: 609  VMTYASVVFA 638
            +M Y S V+A
Sbjct: 1030 IMNYCSEVYA 1039


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 58.0 bits (134), Expect = 8e-09
 Identities = 38/139 (27%), Positives = 66/139 (47%)
 Frame = +3

Query: 75  LTAGVPQGSALSPLLFSLYINDIPRSPETHLALFADDTAIYYSCRKMSLLHRRLQIAVAT 254
           L  GVPQGS +SP LF+ Y+ D+P   +T L  +ADD +I    +K+     ++Q+ +  
Sbjct: 529 LLGGVPQGSVISPNLFTFYLKDMPTQQDTMLISYADDMSIIARDKKIEKAAEKVQLHIDE 588

Query: 255 LGQWFRKWRIDINPTKSAAVLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPWVS 434
           + ++ ++  + I+  KS   +F         S  P   +         I     PIP ++
Sbjct: 589 IAKYLKERGMSISAEKSTVTVF---------SCDPKEHK-----TKPDIYWMDDPIPVIN 634

Query: 435 KVKYLGVTLDRGMTFRPHI 491
             K LG+TL+     + H+
Sbjct: 635 APKLLGITLNTMTGTKDHV 653


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 59/226 (26%), Positives = 98/226 (43%), Gaps = 28/226 (12%)
 Frame = +3

Query: 75  LTAGVPQGSALSPLLFSLYINDIPRS--PETHLALFADDTAIYYSCRKMSLLHRRLQIAV 248
           +++GVP+GS   P LF ++IN +  S  P    + FADD  +Y     +      +Q  +
Sbjct: 53  ISSGVPKGSVSGPFLFLIFINSLLLSVPPSISCSAFADDLKVYSHSPPL------IQTTI 106

Query: 249 ATLGQWFRKWRIDINPTKSAAVLFKRGRPPN-------ITSSIPLRSRRANTSAVS---- 395
             +  W    ++ +   K AA+L K G   N       + +S+  R   A+ + VS    
Sbjct: 107 DLITTWSENNKLPLAVHK-AALLNKLGFSSNCVLLLAPLINSLVCRLLAASRTGVSTVAH 165

Query: 396 ------------PITLF---GQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGR 530
                       P T++     PI   +  + LG+  D  +TF+PHIK +    +  L R
Sbjct: 166 SKTCLLHLGKKNPKTVYKINNLPISPSNIARDLGILTDSKLTFKPHIKKI---VSLALLR 222

Query: 531 LYPMLCSRSKLSLRNKVTLYKTCIRPVMTYASVVFAHAARTHLKSL 668
              +L S   L       L+KT I P++ Y S V++    + L +L
Sbjct: 223 CKQLLKSFKSLCPEFYCNLFKTYILPLIEYGSAVYSPKPSSSLSTL 268


>AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical
           protein K09H9.4 protein.
          Length = 328

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 27/97 (27%), Positives = 48/97 (49%)
 Frame = +3

Query: 405 LFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVT 584
           L G PI   +  + LG  +   + F  H K   + A F L  ++    + +K  +   + 
Sbjct: 136 LDGYPIERKTITRDLGFLISEKLDFSEHWKKSINLAKFQLANIFNQYSTSNKKLM---IL 192

Query: 585 LYKTCIRPVMTYASVVFAHAARTHLKSLQVIQSRFCR 695
           LYKT IRP + Y +VV +   ++  K+++ +Q+ F R
Sbjct: 193 LYKTFIRPRLEYGTVVSSPTKKSDEKAIESVQNAFTR 229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,563,339
Number of Sequences: 27780
Number of extensions: 439399
Number of successful extensions: 1217
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)