Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_G02
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...   214   1e-56
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo...    34   0.029
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    29   0.63 
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    29   0.63 
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    29   0.83 
SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase Gmh3|Schizo...    28   1.4  
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc...    28   1.4  
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy...    27   4.4  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    27   4.4  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    27   4.4  

>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score =  214 bits (523), Expect = 1e-56
 Identities = 101/151 (66%), Positives = 119/151 (78%), Gaps = 1/151 (0%)
 Frame = +1

Query: 280 DFKIEP-SESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFIN 456
           DF I+P + S  K+DTA WPLLLKNFD+L VRT HYTP+P GN+PLKRPI++YV SG IN
Sbjct: 9   DFMIKPEATSASKIDTAEWPLLLKNFDKLLVRTGHYTPIPCGNNPLKRPIAEYVSSGVIN 68

Query: 457 VDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 636
           +DKP+NPSSHEVV+W+K+IL+VEKTGHSGTLDPKVTGCLI+C DRATRLVKSQQ+AGKEY
Sbjct: 69  LDKPANPSSHEVVAWVKKILRVEKTGHSGTLDPKVTGCLIICNDRATRLVKSQQSAGKEY 128

Query: 637 VAGFQLAFSRXEYSKVTQGLXKLRGALSXXP 729
           V   +L  S      V   +  L GAL   P
Sbjct: 129 VCVLRLHDSVEGERNVASAIETLTGALFQRP 159



 Score = 29.1 bits (62), Expect = 0.83
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 644 VFNLHSAVXNIQKSHRAWXSCV-ELYPXAPLXSAVKRQLGVRTGYDS 781
           V  LH +V   +    A  +    L+   PL SAVKRQL +R+ Y+S
Sbjct: 131 VLRLHDSVEGERNVASAIETLTGALFQRPPLISAVKRQLRIRSIYES 177


>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 33.9 bits (74), Expect = 0.029
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 526 KTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVA 642
           K GH GTLDP  +G L+V +   T+ + S  +  K Y A
Sbjct: 107 KIGHGGTLDPLASGVLVVGLGTGTKQLSSLLSCMKTYRA 145


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 433 YVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHS 540
           ++K   + +D+P+N    E V+W++  L  E  GH+
Sbjct: 436 FIKPTLMMLDEPTNHLDLEAVAWLEEYLTHEMEGHT 471


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 334 PLLLKNFDRLNVRTNHYTPLPFGNSPLKRP 423
           P+LL   +  N   N  TP PFG SP+  P
Sbjct: 259 PILLSPLNYQNSSLNPSTPSPFGGSPVMHP 288


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +1

Query: 349 NFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHE 489
           ++DR + + NH +P P   +P K P+ +  ++   N D   + S+ +
Sbjct: 158 DYDRRSPKRNHRSPSPVSFAPQKSPVENETETNVDNGDTKISESNEK 204


>SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase
           Gmh3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 22/63 (34%), Positives = 26/63 (41%)
 Frame = +1

Query: 451 INVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGK 630
           IN D P  P SHE+V     IL       SG + P+       CI+      K   N G 
Sbjct: 76  INEDDPQEPKSHEIV-----ILLASDGRSSGNMAPETFN---QCIENRINYAK-HHNYGF 126

Query: 631 EYV 639
           EYV
Sbjct: 127 EYV 129


>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
           L2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 318

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 337 LLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSG 447
           +LL+   +  ++T  Y P+  G   LKRP+SDY+  G
Sbjct: 1   MLLRPKTKFEIKT--YKPISPGLRHLKRPVSDYLWKG 35


>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 362 KRSKFFNNKGQ*AVSSFFT 306
           K+SK+F+ +G   +SSFFT
Sbjct: 273 KKSKYFSGEGMTKISSFFT 291


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 460 DKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIV 579
           +KP  PS H ++S+     K+E T ++ T   K  G  IV
Sbjct: 563 EKPVKPSKHNIMSFCILQGKIEVTVNATTFRMKKDGVFIV 602


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = +1

Query: 184 RRYCSPVTTHFQRRKRKKN----KDGVSLGAFQTIGDFK 288
           R   SP++TH ++R+R  N     DG+ L    T  D++
Sbjct: 240 RNVVSPISTHTKKRRRTANTSQRNDGLDLNTVFTTNDWE 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,526,707
Number of Sequences: 5004
Number of extensions: 73415
Number of successful extensions: 216
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)