Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_G02
(847 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1408 - 26353389-26355191 210 1e-54
03_03_0094 + 14378953-14380728 209 2e-54
02_02_0421 - 10042184-10042197,10042442-10042822,10044158-100442... 103 2e-22
04_04_0876 - 29005543-29005630,29005841-29006596,29006939-29006955 95 5e-20
11_06_0293 + 22018128-22018556 91 8e-19
05_01_0060 - 418559-418577,418655-418738,418857-418966,419467-41... 58 9e-09
12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775 31 1.5
03_02_0655 + 10220328-10220400,10220686-10220737,10220959-10221301 29 6.2
01_06_1213 - 35466954-35467592 29 6.2
11_06_0576 - 25127807-25128107,25128241-25128357,25128730-251292... 28 8.1
>07_03_1408 - 26353389-26355191
Length = 600
Score = 210 bits (513), Expect = 1e-54
Identities = 97/149 (65%), Positives = 119/149 (79%)
Frame = +1
Query: 283 FKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVD 462
+ I+P V LDT+ WPLLLKN+DRLNVRT HYTPLP G+SPLKRPI++Y++ G IN+D
Sbjct: 50 YLIKPQSLVPSLDTSTWPLLLKNYDRLNVRTGHYTPLPSGHSPLKRPIAEYLRYGVINLD 109
Query: 463 KPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVA 642
KPSNPSSHEVV+WIKR+L+V+KTGHSGTLDPKVTG LIVC+DRATRLVKSQQ AGKEYV
Sbjct: 110 KPSNPSSHEVVAWIKRLLRVDKTGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVC 169
Query: 643 GFQLAFSRXEYSKVTQGLXKLRGALSXXP 729
+ + + ++V + L L GA+ P
Sbjct: 170 VARFHAAVPDTARVARALEALTGAVFQRP 198
Score = 33.1 bits (72), Expect = 0.29
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 644 VFNLHSAVXNIQKSHRAWXSCV-ELYPXAPLXSAVKRQLGVRTGYDS 781
V H+AV + + RA + ++ PL SAVKRQL VRT Y+S
Sbjct: 170 VARFHAAVPDTARVARALEALTGAVFQRPPLISAVKRQLRVRTIYES 216
>03_03_0094 + 14378953-14380728
Length = 591
Score = 209 bits (511), Expect = 2e-54
Identities = 97/149 (65%), Positives = 118/149 (79%)
Frame = +1
Query: 283 FKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVD 462
+ I+P LDT+ WPLLLKN+DRLNVRT HYTPLP G+SPLKRPI++Y++ G IN+D
Sbjct: 54 YLIKPQSVAPPLDTSAWPLLLKNYDRLNVRTGHYTPLPAGHSPLKRPIAEYLRYGVINLD 113
Query: 463 KPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVA 642
KPSNPSSHEVV+WIKR+L+VEKTGHSGTLDPKVTG LIVC+DRATRLVKSQQ AGKEYV
Sbjct: 114 KPSNPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVC 173
Query: 643 GFQLAFSRXEYSKVTQGLXKLRGALSXXP 729
+ + + ++V + L L GA+ P
Sbjct: 174 VARFHAAVPDTARVARALEALTGAVFQRP 202
Score = 33.1 bits (72), Expect = 0.29
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 644 VFNLHSAVXNIQKSHRAWXSCV-ELYPXAPLXSAVKRQLGVRTGYDS 781
V H+AV + + RA + ++ PL SAVKRQL VRT Y+S
Sbjct: 174 VARFHAAVPDTARVARALEALTGAVFQRPPLISAVKRQLRVRTIYES 220
>02_02_0421 -
10042184-10042197,10042442-10042822,10044158-10044261,
10044634-10044734,10044806-10045147,10045981-10046158,
10047696-10047776,10049190-10049449
Length = 486
Score = 103 bits (246), Expect = 2e-22
Identities = 47/79 (59%), Positives = 62/79 (78%)
Frame = +1
Query: 403 NSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIVC 582
+SPLK+PI+ ++ G IN++KPSN SHEV++W K +L +EKT H+GTLDPKVTG LIVC
Sbjct: 17 HSPLKQPIAKHLCYGVINLNKPSNLLSHEVITWNKNLLHIEKTSHNGTLDPKVTGNLIVC 76
Query: 583 IDRATRLVKSQQNAGKEYV 639
++RATRLVKS +YV
Sbjct: 77 VNRATRLVKSWNGVMLKYV 95
>04_04_0876 - 29005543-29005630,29005841-29006596,29006939-29006955
Length = 286
Score = 95.5 bits (227), Expect = 5e-20
Identities = 48/76 (63%), Positives = 56/76 (73%)
Frame = +1
Query: 490 VVSWIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAGFQLAFSRX 669
VV+WIKR+L+V KTGHSGTLDPKVTG LIVC+DRATRLVKSQQ AGKEYV +R
Sbjct: 98 VVAWIKRLLRVNKTGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYV-----CVARF 152
Query: 670 EYSKVTQGLXKLRGAL 717
+ + L L GA+
Sbjct: 153 HAADTARALEALTGAM 168
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +2
Query: 713 LYPXAPLXSAVKRQLGVRTGYDS 781
++ PL SAVKRQL VRT Y+S
Sbjct: 168 MFQRLPLISAVKRQLRVRTIYES 190
>11_06_0293 + 22018128-22018556
Length = 142
Score = 91.5 bits (217), Expect = 8e-19
Identities = 45/58 (77%), Positives = 49/58 (84%), Gaps = 2/58 (3%)
Frame = +1
Query: 490 VVSWIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY--VAGFQLA 657
VV+WIKR+L+V KTGHSGTLDPKVTG LIVC+D ATRLVKSQQ AGKEY VA F A
Sbjct: 59 VVAWIKRLLRVNKTGHSGTLDPKVTGNLIVCVDLATRLVKSQQGAGKEYGCVARFHAA 116
>05_01_0060 -
418559-418577,418655-418738,418857-418966,419467-419577,
419914-419992,420182-420264,420347-420439,420902-421810
Length = 495
Score = 58.0 bits (134), Expect = 9e-09
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Frame = +1
Query: 403 NSPLKRPISDYVKSGFINVDKPSNP--SSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLI 576
N+ KR + V +N+ P +S V ++R++ V+K GH+GTLDP TG LI
Sbjct: 291 NARFKRLHQNLVLFMELNICLSCKPGWTSFTVCGKLRRLVNVQKVGHAGTLDPMATGLLI 350
Query: 577 VCIDRATRLVKSQQNAGKEYVAGFQL 654
VC+ +AT++V Q K Y F+L
Sbjct: 351 VCVGKATKVVDRYQGMVKGYSGVFRL 376
>12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775
Length = 1123
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +3
Query: 585 RPRHET---RQITTERWQRVCSRFSTCIQPXRIFKSHTGLGXAAWSSIXXPR 731
RP HE R +TER+ RV SR +QP R F + ++WSS PR
Sbjct: 21 RPSHEIQIRRFRSTERYSRVPSR--RLLQPQRAFNLISIYKRSSWSSARRPR 70
>03_02_0655 + 10220328-10220400,10220686-10220737,10220959-10221301
Length = 155
Score = 28.7 bits (61), Expect = 6.2
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = +1
Query: 397 FGNSPLKRPISDYVKSGFI--NVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGC 570
F + P R I D V +G NV NP + W KR L+ +K G + C
Sbjct: 51 FKDYPFTREIWDKVTAGMEQNNVLPVYNPDERLIDWWEKRTLQQDKNQTEGMRSLHMLLC 110
Query: 571 LIVCIDRATRLVKSQQ 618
V +R R+ K ++
Sbjct: 111 WEVWCERNRRIFKGKE 126
>01_06_1213 - 35466954-35467592
Length = 212
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = -1
Query: 823 PRPPXFCPGRNPGVTVVPRPDTQLSLHGRXKRGXW 719
P P G P V P+P QLS + KR W
Sbjct: 6 PGPSSAAAGGAPAVAAAPQPPAQLSRYESQKRRDW 40
>11_06_0576 -
25127807-25128107,25128241-25128357,25128730-25129271,
25129353-25129814,25129893-25130626,25130715-25130742
Length = 727
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Frame = +3
Query: 444 WLHQRRQTEQPQLPRSSFMDKTYFKSRKDWSFGHARS-ESYGLPYRLHRPRHETRQITTE 620
W + P + K + K K W G ++ + P+ H P E QIT
Sbjct: 95 WTAMEKWFTFPAEAKDRLKRKAFQKMGKAWKNGKSKLFTEFVNPHGNHTPFDEYPQITEA 154
Query: 621 RWQRVCS 641
W+ CS
Sbjct: 155 VWEEFCS 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,070,043
Number of Sequences: 37544
Number of extensions: 484666
Number of successful extensions: 1279
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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