Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_G01
         (776 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23523-6|AAC46561.1|   86|Caenorhabditis elegans Hypothetical pr...    28   8.6  
AC024751-3|AAK21513.2|  440|Caenorhabditis elegans Hypothetical ...    28   8.6  

>U23523-6|AAC46561.1|   86|Caenorhabditis elegans Hypothetical
           protein F53A9.6 protein.
          Length = 86

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
 Frame = +1

Query: 94  HSISSYRPPLLHQNQ---HYKSIWTFDLHAPYRRARHL*RQHGLQYCRHLQRVRHHHAN 261
           H    Y PP +H +    H+  + T   H  +    H    HG  Y  H +   HHH +
Sbjct: 25  HGAPGYMPPTVHVHTDGGHHGHMDTHHHHDSHHHGGHHGGHHGGHYESHYES-HHHHGH 82


>AC024751-3|AAK21513.2|  440|Caenorhabditis elegans Hypothetical
           protein Y18H1A.10 protein.
          Length = 440

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = -2

Query: 118 EVYKMRWNGKP--LHFLPFQDNG 56
           EV+   WNG+P  +  LPF++NG
Sbjct: 118 EVFSTVWNGRPVAIKVLPFENNG 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,050,377
Number of Sequences: 27780
Number of extensions: 286439
Number of successful extensions: 967
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)