Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_F24
         (968 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.14 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    28   1.7  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    24   2.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.3  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   9.2  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   9.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.9 bits (69), Expect = 0.14
 Identities = 18/56 (32%), Positives = 18/56 (32%)
 Frame = -2

Query: 607 PPXPXRGXXXPXXXXKXXXXPPPXGGGXXKXXXXGXPPPPPPPXXKKXGGXGXAPP 440
           PP P      P         PPP           G PPPPPPP      G    PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPA-------PIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 30.7 bits (66), Expect = 0.32
 Identities = 19/50 (38%), Positives = 19/50 (38%)
 Frame = -2

Query: 607 PPXPXRGXXXPXXXXKXXXXPPPXGGGXXKXXXXGXPPPPPPPXXKKXGG 458
           PP P  G   P         PPP G         G PPPPPPP     GG
Sbjct: 753 PPAPIMGGPPPP--------PPPPG-----VAGAGPPPPPPPPPAVSAGG 789



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = -2

Query: 745 GXXXPPPXXXXXXXXGGPPXTPPXPXXXXGG 653
           G   PPP        G PP  PP P    GG
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 25.8 bits (54), Expect = 9.2
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = +2

Query: 617 PPPAXXXXXKKNAPPXXXXXGGGXGXXPPXXXXXXXGGXR 736
           PPPA         PP     G G    PP       GG R
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 499  PPPPPPPXXKKXGGXGXAP 443
            PPPPPPP     GG   +P
Sbjct: 947  PPPPPPPLVSAAGGKFVSP 965



 Score = 25.8 bits (54), Expect = 9.2
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -2

Query: 499  PPPPPPPXXKKXGGXGXAPPXXXXN 425
            PPPPPPP      G     P    N
Sbjct: 946  PPPPPPPPLVSAAGGKFVSPAVSNN 970


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.2 bits (50), Expect(2) = 2.2
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = -2

Query: 499 PPPPPPPXXKKXGGXGXAP 443
           PPPPPPP  +        P
Sbjct: 191 PPPPPPPAVEDQAADANEP 209



 Score = 21.8 bits (44), Expect(2) = 2.2
 Identities = 8/22 (36%), Positives = 8/22 (36%)
 Frame = -2

Query: 544 PPXGGGXXKXXXXGXPPPPPPP 479
           PP              PPPPPP
Sbjct: 173 PPSAAAPATSLPSDYNPPPPPP 194


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = -2

Query: 544 PPXGGGXXKXXXXGXPPPPPPPXXKKXGGXGXAP 443
           PP G G         PPPPPPP     G     P
Sbjct: 325 PPIGNGSSNS---SLPPPPPPPRSNAAGSIPLPP 355



 Score = 25.8 bits (54), Expect = 9.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 499 PPPPPPPXXKKXG 461
           PPPPPPP  +  G
Sbjct: 311 PPPPPPPSRRNRG 323


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 505 GXPPPPPPPXXKKXGGXGXAPP 440
           G PPPPPPP   +       PP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPP 28


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 505 GXPPPPPPP 479
           G PPPPPPP
Sbjct: 304 GLPPPPPPP 312


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -2

Query: 499  PPPPPPPXXKKXGGXGXAP 443
            PPPPPP    K G    AP
Sbjct: 1882 PPPPPPMALPKAGPPSAAP 1900


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,770,016
Number of Sequences: 5004
Number of extensions: 23189
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)