Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_F22
         (851 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   8.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   8.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -2

Query: 124 PSIGGPAPQ-SEHERPTGCPTRGRGTSTAPRPLSG 23
           PS G P PQ S H+ P   P RG   + +  P  G
Sbjct: 16  PSSGAPGPQPSPHQSPQ-APQRGSPPNPSQGPPPG 49



 Score = 22.2 bits (45), Expect = 6.2
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
 Frame = -2

Query: 238 TQVHRTGPSIAPPPRRDGAQPDPVPQYSGAAGSKNRPSPSIGGP--APQSEH 89
           TQ  +   S AP P+    Q    PQ          P P  GGP  AP S++
Sbjct: 10  TQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPP--GGPPGAPPSQN 59


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 6/56 (10%)
 Frame = -2

Query: 259  PGCAAQPTQVHRTGPS------IAPPPRRDGAQPDPVPQYSGAAGSKNRPSPSIGG 110
            PG   Q  Q   T PS        PP   +  Q     Q    +   N+P P+ GG
Sbjct: 975  PGGVVQSQQPIMTDPSPFKRGRYTPPQPANAQQGQAQAQAKPQSQEANKPKPATGG 1030


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 63  RVGQPVGLSCSLCGAGPP 116
           RVG  V + C + G  PP
Sbjct: 323 RVGDNVEIKCDVTGTPPP 340


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 108 GPPIDGDGRFFEPA 149
           GPP DG+G    P+
Sbjct: 355 GPPNDGNGNILSPS 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,086
Number of Sequences: 438
Number of extensions: 6033
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)