Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_F18
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    33   0.030
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.49 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    24   2.8  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   3.5  
SPAC17H9.07 |||signal recognition particle subunit Srp21 |Schizo...    26   4.6  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   8.0  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 33.5 bits (73), Expect = 0.030
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +1

Query: 499 PPPPPPPXXXXKKKKKXXPPXPPXXXXXKKKKKK 600
           PPPPPPP       +   PP PP     KK+K K
Sbjct: 9   PPPPPPPPGFEPPSQ---PPPPPPPGYVKKRKNK 39



 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 502 PPPPPPXXXXKKKKKXXP 555
           PPPPPP    KK+K   P
Sbjct: 24  PPPPPPPGYVKKRKNKTP 41


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 499 PPPPPPPXXXXKKKKKXXPPXPP 567
           PPPPPPP           PP PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = -3

Query: 375 PPPXXFFFPPPXXXXXGGXTPPPXXXGGGXGETP 274
           P P     PPP     G   PPP     G G  P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 23.8 bits (49), Expect(2) = 2.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 499 PPPPPPP 519
           PPPPPPP
Sbjct: 337 PPPPPPP 343



 Score = 21.4 bits (43), Expect(2) = 2.8
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +1

Query: 502 PPPPPPXXXXKKKKKXXP 555
           PPPPPP       ++  P
Sbjct: 361 PPPPPPRSAPSTGRQPPP 378


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 499  PPPPPPPXXXXKKK 540
            PPPPPPP    +KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108


>SPAC17H9.07 |||signal recognition particle subunit Srp21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 536 KKKKXXPXXPPXXXXKKKKKKKK 604
           ++KK  P  PP    KKK+ KKK
Sbjct: 98  EQKKAEPSAPPKGSKKKKRGKKK 120


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +1

Query: 499 PPPPPPPXXXXKKKKKXXP 555
           PPPPPPP        K  P
Sbjct: 370 PPPPPPPPELLNHSPKSRP 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,307,394
Number of Sequences: 5004
Number of extensions: 16144
Number of successful extensions: 221
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)