Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_F15
(867 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 196 1e-50
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 195 4e-50
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847... 31 1.6
09_03_0154 + 12831120-12831222,12831761-12831858,12832019-128321... 29 3.6
08_02_0695 + 20122838-20122949,20123238-20123335,20123520-201236... 29 3.6
01_05_0125 - 18382402-18382761,18382863-18383036 29 3.6
05_04_0324 - 20273797-20274261 29 4.8
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 196 bits (479), Expect = 1e-50
Identities = 83/116 (71%), Positives = 103/116 (88%)
Frame = +1
Query: 52 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 231
F+HP HGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE ++PGS
Sbjct: 6 FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPGS 65
Query: 232 KINKKEIAEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 399
K++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKN
Sbjct: 66 KLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKN 121
Score = 57.2 bits (132), Expect = 2e-08
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Frame = +1
Query: 583 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM-XXXXXXXXXXHIMEVQLNGGTIEDQSE 759
+ + G+K I+ +KM +Y S+VRVIAHTQ+ H+ME+Q+NGGTI D+ +
Sbjct: 137 YDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLMEIQINGGTIADKVD 196
Query: 760 MG 765
G
Sbjct: 197 YG 198
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 195 bits (475), Expect = 4e-50
Identities = 82/116 (70%), Positives = 103/116 (88%)
Frame = +1
Query: 52 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 231
F+HP HGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE ++PGS
Sbjct: 6 FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREVEKPGS 65
Query: 232 KINKKEIAEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 399
K++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKN
Sbjct: 66 KLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKN 121
Score = 56.0 bits (129), Expect = 4e-08
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Frame = +1
Query: 583 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM-XXXXXXXXXXHIMEVQLNGGTIEDQSE 759
+ + G+K I+ +KM +Y SVVRVI HTQ+ H+ME+Q+NGGTI D+ +
Sbjct: 137 YDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAHLMEIQINGGTIADKVD 196
Query: 760 MG 765
G
Sbjct: 197 YG 198
>01_06_0083 +
26283492-26283756,26284255-26284467,26284620-26284771,
26284884-26285157,26285277-26285485
Length = 370
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 609 NRKRFQEDDPLL*CCKSHCPHSNEAVKTATKEGSHYGSP 725
N +RF +DPLL CC H P+ A T + + +G P
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGA--TCDRTATVWGDP 333
>09_03_0154 +
12831120-12831222,12831761-12831858,12832019-12832195,
12832307-12832407,12832503-12832578,12832665-12832724,
12832810-12832994,12833078-12833174,12833279-12833365,
12833453-12833511,12833617-12833708,12833821-12833898,
12834000-12834160,12834267-12834485
Length = 530
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 766 GPFHFGPRWYHR*VGLP*CXPSFVAVLTASF 674
GP H G RW++ + +P FVA L A F
Sbjct: 450 GPVHTGARWFNDMINVPFSSKPFVAGLVAYF 480
>08_02_0695 +
20122838-20122949,20123238-20123335,20123520-20123696,
20123790-20123890,20124049-20124124,20124213-20124272,
20124362-20124546,20124638-20124734,20124817-20124903,
20124989-20125047,20125157-20125248,20125436-20125513,
20125617-20125777,20125880-20126098
Length = 533
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 766 GPFHFGPRWYHR*VGLP*CXPSFVAVLTASF 674
GP H G RW++ + +P FVA L A F
Sbjct: 453 GPVHTGARWFNDMINVPFASKPFVAGLIAYF 483
>01_05_0125 - 18382402-18382761,18382863-18383036
Length = 177
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -3
Query: 412 REESSFCRSDVDSLQTYAPPRQSTERVVHEGSQCIQQHRHKPSE 281
R+ S ++ +L PPR ST R+V E C+ + R + +E
Sbjct: 38 RQTMSRLYDELGALLPNLPPRASTTRIVEEAIACVGELRARTAE 81
>05_04_0324 - 20273797-20274261
Length = 154
Score = 29.1 bits (62), Expect = 4.8
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 130 FPKDDPSKPVHLTAFIGYKAGMTHVVRE--PDRPGSKINKKEIAEAVTIIETPPMVCVGV 303
FP D+P K VH+ G + +T ++ E P + +N EA + P CVGV
Sbjct: 60 FPPDNPQKFVHVHRVFG-ASNVTKLLNELHPYQREDAVNSLAY-EADMRLRDPVYGCVGV 117
Query: 304 VGYIETPHGLRAL 342
+ ++ H LR L
Sbjct: 118 ISVLQ--HQLRQL 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,926,392
Number of Sequences: 37544
Number of extensions: 471818
Number of successful extensions: 973
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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