Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_F14
         (869 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0373 + 2783596-2784933                                           31   0.91 
06_03_1496 - 30567968-30568210,30568345-30568513,30568635-305687...    29   4.8  
04_01_0041 - 464695-464850,467485-469029                               29   6.4  
03_02_0907 - 12297523-12297891,12298051-12298200,12298356-122984...    29   6.4  
01_05_0227 - 19512866-19514983                                         29   6.4  

>07_01_0373 + 2783596-2784933
          Length = 445

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = -1

Query: 92  EEEKALTKEGMAEAAETXKGTISSMNRS 9
           E+++ LTK G +  +ET KG++ S++RS
Sbjct: 151 EQQQQLTKSGCSSTSETSKGSVLSLSRS 178


>06_03_1496 -
           30567968-30568210,30568345-30568513,30568635-30568736,
           30569087-30571855,30572402-30572430,30572546-30572659,
           30572735-30572846,30574730-30574845,30574928-30575068,
           30575121-30575243,30575346-30575478,30575842-30575972,
           30576065-30576300,30577073-30577376
          Length = 1573

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +3

Query: 513 SRPYASSHPPLRSRLHQPDH--QIPDSYTNHPXLNIHFHQSPDAVLKGVRA 659
           S+P++S  PP  S L Q  H  +I  S T  P  N+  + S  +V   VR+
Sbjct: 550 SKPFSSGSPPPGSTLRQRQHRRKIKKSLTALPPSNVLVNNSSRSVTAPVRS 600


>04_01_0041 - 464695-464850,467485-469029
          Length = 566

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 244 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 420
           +I   R + D++ T  +SN + V +LP VSS  + Y D ++   +    P   P  ++ V
Sbjct: 40  LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99

Query: 421 TVD 429
            +D
Sbjct: 100 PLD 102


>03_02_0907 -
           12297523-12297891,12298051-12298200,12298356-12298463,
           12298693-12298815,12299039-12299312,12304895-12304973,
           12305222-12305256,12305372-12305429,12306185-12307274
          Length = 761

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +2

Query: 635 RRTKRSSRRGLSLRCHXXLHQRISPPXHWAWLKGFAPL 748
           R T+R +RRG   +    LH   SPP H A  +   PL
Sbjct: 527 RDTEREARRGDDCQVLRLLHMSTSPPSHLAEHQVLVPL 564


>01_05_0227 - 19512866-19514983
          Length = 705

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 461 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 369
           S +T + +QQ   +  ++ LG  GKTT ++L
Sbjct: 18  SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,249,138
Number of Sequences: 37544
Number of extensions: 437982
Number of successful extensions: 1198
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)