Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_F12
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom...    30   0.38 
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    29   0.66 
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    29   0.87 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   3.5  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    27   4.6  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    26   6.1  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    26   8.1  

>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 245 RDVFEHVRSAAKIKHYADQNTSSGTPQEREC 337
           R+VFE    AA +KH      SSGT +++ C
Sbjct: 169 REVFESATRAAMLKHKPKVKPSSGTKKKKRC 199


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
 Frame = +2

Query: 179 FNKIMSTLKLTSEVRSGLYSHWRDVFEHVRSAAKIKHYADQNTSSGTPQEREC-SIRKSC 355
           F+K++ST+  ++E+ + L   WRD  +HV    +     +   +S       C       
Sbjct: 384 FSKMLSTI--SNEI-TNLQGDWRDQLDHVEFLQEHLGPLEVELASVKVLYDNCFQAGIEE 440

Query: 356 NNVSVTSMEDLSHEEIVTSYVLAHVAQF 439
           N+ ++ S EDL HE  +T+ ++A+  ++
Sbjct: 441 NDYTMFSYEDLEHEFGITANIIANKIKY 468


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -3

Query: 741 ACLLEPEVIERVVLLVLNRVDSKISATIHSLMSWFTVLVPYNSSSSHWLKNDSCRNYPL 565
           AC L+P++   +  L+ N  +  I+A  H L    T+L    + +S     DS  NY L
Sbjct: 507 ACRLDPKIDNTISALLENGNNKVINANCHLLRELVTLLPASTAYTSSPYGGDSFYNYVL 565


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 278  KIKHYADQNTSSGTPQERECSIRKSCNNVSVTSMEDLSHEEI 403
            K K Y  Q   SG   +   SIRK+C N+ +     L H  +
Sbjct: 1717 KQKEYVTQLILSGLLNKNTNSIRKTCMNILLYLRRQLGHHAL 1758


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 356 NNVSVTSMEDLSHEEIVTSYVLAHVAQFDCRRHHMAFTNGNT 481
           +N+SVT+   L +  +V++Y L       CR    AFTNG T
Sbjct: 853 SNISVTNENRLQYIHLVSNYYLNARLSRQCR----AFTNGFT 890


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 18/101 (17%)
 Frame = -3

Query: 705 VLLVLNRVDSKISATI--------HSLMSWFTVLVPYNSS----SSHWLKNDSCRN---- 574
           VL + N + S + A I        +SL+SW  +   +NS     S+ +L+ D C+N    
Sbjct: 30  VLSLTNSIQSNVGAVISYAVLYFVNSLLSWCMLSSWFNSKLSKLSAGYLQFD-CQNDGKC 88

Query: 573 YPLVMTDPLLRS--KFHLRFALALISCNSLLRVVFPLVNAM 457
           Y ++    L  +   FHL  A  L  CN+  RV   + N +
Sbjct: 89  YSVIAVHRLSFTLVMFHLFLAFILSLCNTRSRVAIKIQNGL 129


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = -3

Query: 738 CLLE-PEVIERVVLLVLN---RVDSKISATIHSLMSWFTVLVPYNSSSSHW 598
           C LE PEV+     L ++   R D  +SA     + W T L+   SS SH+
Sbjct: 604 CFLELPEVLHGKKFLKVDEATREDMLMSAETPDDILWITTLISTGSSMSHF 654


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,370,923
Number of Sequences: 5004
Number of extensions: 65567
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)