Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_F12
         (875 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0042 - 12731228-12731362,12731984-12732046,12732136-127322...    32   0.52 
07_01_0116 - 855122-855352,856733-857059,857095-858481,858636-85...    31   1.2  
04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879     30   2.8  
11_06_0130 - 20408835-20411771                                         29   4.9  

>07_03_0042 -
           12731228-12731362,12731984-12732046,12732136-12732207,
           12732783-12732855,12732937-12733005,12733375-12733439,
           12733677-12734087,12734186-12734230,12734338-12734413,
           12734555-12734629,12735101-12735207,12736573-12736635
          Length = 417

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 19/71 (26%), Positives = 35/71 (49%)
 Frame = +2

Query: 176 VFNKIMSTLKLTSEVRSGLYSHWRDVFEHVRSAAKIKHYADQNTSSGTPQERECSIRKSC 355
           +FNK+ STL   S V SG ++  RD      +    + + D+ +SS + ++R  +   S 
Sbjct: 169 LFNKLRSTLSSASPVLSGAFAKLRDTRVSTYAKQGYEIFKDELSSSSSRKKRNHARHASA 228

Query: 356 NNVSVTSMEDL 388
             V  ++  +L
Sbjct: 229 GTVEKSTRTEL 239


>07_01_0116 -
           855122-855352,856733-857059,857095-858481,858636-858895
          Length = 734

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
 Frame = -3

Query: 678 SKISATIHSLMSW-FTVLVPYNSSSSHWLKNDS---CRNYPLVMTDPLLRSKFHLRFALA 511
           S  SA + SL+S  FTVL  Y+++  HWL+  S    +  P V+ D    +K  +   + 
Sbjct: 258 SSTSAAVWSLVSAAFTVLTAYSTTKLHWLQGGSTVVVQGGPTVVGD----NKADIFITML 313

Query: 510 LISCNSLLRVVFPLV 466
           L+   +LL ++ PL+
Sbjct: 314 LLVSIALLELLQPLL 328


>04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879
          Length = 696

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 290 YADQNTSSGTPQERECSIRKSCN-NVSVTSMEDLSHEE 400
           + D   SSG+P   E S+ K C+ ++S TS  D  ++E
Sbjct: 523 HEDMQASSGSPDGSEPSVNKICDGSISWTSRNDFEYKE 560


>11_06_0130 - 20408835-20411771
          Length = 978

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/58 (27%), Positives = 34/58 (58%)
 Frame = +3

Query: 369 LPRWKI*ATKKSSHLTFWLMLPSLTVDVITWRSLTEIQHVTSYCKKLRQVQISSETSI 542
           LP+  + +TKK  H    ++L +LTV +++  ++  + ++   C K R+ ++ + TSI
Sbjct: 715 LPQCSLKSTKKKKHQ---ILLIALTVCLVSTLAIFSLLYMLLTCHKRRKKEVPAMTSI 769


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,459,379
Number of Sequences: 37544
Number of extensions: 406018
Number of successful extensions: 816
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)