Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_F11
(909 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 32 0.72
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 32 0.72
08_01_1010 - 10215625-10216335,10216372-10216473 30 2.9
03_05_0402 - 23851755-23851802,23852012-23852022,23853055-23853427 30 2.9
03_04_0006 + 16257288-16259522 30 2.9
07_03_1107 - 24024387-24024497,24025799-24026410 29 5.1
06_03_0854 + 25400855-25403741,25406174-25407708 29 5.1
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 6.7
05_06_0233 + 26599068-26599466,26601214-26601829,26601871-266019... 28 8.9
01_01_0613 - 4571689-4572348 28 8.9
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 31.9 bits (69), Expect = 0.72
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 139 DENSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLSL 291
D+ + PR + D EW N PT+ ++ + +PRE Q+ K + L
Sbjct: 1391 DQGNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFIL 1441
>03_05_1065 +
30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 31.9 bits (69), Expect = 0.72
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = -2
Query: 644 SFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLEPDHAGV*PATSVSATSPLC 465
+F P+ P LA + GH R+ + D + S G + D + +VSA + LC
Sbjct: 371 AFHPYLP-----LATTSSGHRRFGMEDEIEEELSLAGIFNKGDRSYAVRRAAVSAYAALC 425
Query: 464 TLGTKHRAPADIIDR 420
+ H AP + DR
Sbjct: 426 AVLCAHEAPGGLPDR 440
>08_01_1010 - 10215625-10216335,10216372-10216473
Length = 270
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = -2
Query: 548 NSPPGSVLEPDHAGV*PATSVSATSPLCTLGT--KHRAPADIIDRAPLPPNRVSN 390
++PP PD+ P A SP T T +H A D P PP R ++
Sbjct: 122 STPPPRAASPDYTPSTPTPPRRAASPNYTPSTPQRHAASPDYTPSTPTPPRRAAS 176
>03_05_0402 - 23851755-23851802,23852012-23852022,23853055-23853427
Length = 143
Score = 29.9 bits (64), Expect = 2.9
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Frame = -2
Query: 563 VPPQSNSPPGSVLEPDHAGV*PATSVSATS--PLCTLGTK--HRAP--ADIIDRAPLPP 405
+PPQ ++P G+ + P AG P TS S P T G P A+++ R PLPP
Sbjct: 54 IPPQ-HAPAGAEVVPPSAGATPGTSPSEAEVVPPSTGGWSCVWACPSGAEVVPRPPLPP 111
>03_04_0006 + 16257288-16259522
Length = 744
Score = 29.9 bits (64), Expect = 2.9
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -3
Query: 352 AKRSP---TYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWE 200
A+RSP Y T L + ARL T PA SP +AV S + G W+
Sbjct: 162 ARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 29.1 bits (62), Expect = 5.1
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = -2
Query: 557 PQSNSPPGSVLEPDHAGV*PATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNET 384
P + +PP + P A PAT A +P TK AP +AP P + + T
Sbjct: 50 PTTTTPPAASTPPAAAPTTPATPAPAEAPTTPAPTK--APPTKSTKAPAPAPKAAKAT 105
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 352 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 227
AKR+PT T P AR +++ +F +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 6.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 474 TTLHAWNETPCARRYY 427
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>05_06_0233 +
26599068-26599466,26601214-26601829,26601871-26601917,
26602101-26602268
Length = 409
Score = 28.3 bits (60), Expect = 8.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 651 IQMFSTHRDCESTXYRSFSIKSFSKRCQKSYHRDTG 758
+QM+S+ DC Y+ IKSF + + R TG
Sbjct: 286 VQMYSSTLDCWRKIYKVEGIKSFYRGALSNMFRSTG 321
>01_01_0613 - 4571689-4572348
Length = 219
Score = 28.3 bits (60), Expect = 8.9
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = -2
Query: 599 LALGHLRYSLTDVPPQSNSPPGSVLEPDHAGV*PATSVSATSPLCTLGTKHRAPADIID 423
L LGH YSL PP S + D GV ++S +AT+ +G + R+ +++D
Sbjct: 51 LELGHSVYSLPLPPPPSQPVVVAGGNNDQYGVSSSSSAAATT--SRIGFRTRSEVEVLD 107
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,202,975
Number of Sequences: 37544
Number of extensions: 584722
Number of successful extensions: 1907
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1905
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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