Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_F08
(928 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 34 0.14
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 32 0.56
03_06_0242 + 32596846-32597268 32 0.74
01_05_0687 + 24288648-24292746,24293737-24293844,24294333-242944... 31 0.98
02_02_0119 + 6978697-6979045,6979519-6979581,6979757-6979866,697... 31 1.7
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 2.3
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 4.0
06_02_0257 - 13533689-13533714,13533799-13533925,13534013-135341... 29 5.2
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 9.2
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597... 28 9.2
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 9.2
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 34.3 bits (75), Expect = 0.14
Identities = 24/68 (35%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Frame = +1
Query: 709 PPXPGXPXXGGPX----PVXXRGG-PXLGLXGGXXXPPXRXPPXGXGXPAFPXXVXXXPX 873
PP P GGP P RGG P GG PP PP G G P P
Sbjct: 1149 PPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPP--PPRGHGGVGGPPTPPGAPA 1206
Query: 874 XXXPPXXP 897
PP P
Sbjct: 1207 PPMPPGVP 1214
Score = 29.9 bits (64), Expect = 3.0
Identities = 18/51 (35%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Frame = -3
Query: 848 GNAGXPXPXGGXRXGGXXXPPXRPRXG--PPRXXTGXGPPXXGXPGXGGXG 702
G P P GG PP R G PP G PP G GG G
Sbjct: 1146 GGVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVG 1196
Score = 29.1 bits (62), Expect = 5.2
Identities = 20/62 (32%), Positives = 21/62 (33%)
Frame = +1
Query: 703 PXPPXPGXPXXGGPXPVXXRGGPXLGLXGGXXXPPXRXPPXGXGXPAFPXXVXXXPXXXX 882
P PP P G P P P +G GG PP P G G P V
Sbjct: 1109 PPPPPPPGGITGVPPP------PPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPA 1162
Query: 883 PP 888
PP
Sbjct: 1163 PP 1164
Score = 28.3 bits (60), Expect = 9.2
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = -3
Query: 833 PXPXGGXRXGGXXXPPXRPRXGPPRXXTGXGPPXXGXPG 717
P P G GG PP P P G PP G G
Sbjct: 1187 PPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPPPGGRG 1225
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 32.3 bits (70), Expect = 0.56
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -1
Query: 325 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVGG 161
H P AAA P VP++ P L + GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>03_06_0242 + 32596846-32597268
Length = 140
Score = 31.9 bits (69), Expect = 0.74
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = -3
Query: 848 GNAGXPXPXGGXRXGGXXXPPXRPRXGPPRXXTGXGPPXXGXP 720
G G P GG GG PP RP G G P G P
Sbjct: 7 GGGGRGDPSGGGGGGGVGAPPYRPAAGSVWSLPGMTPRPPGPP 49
>01_05_0687 +
24288648-24292746,24293737-24293844,24294333-24294442,
24295208-24295282
Length = 1463
Score = 31.5 bits (68), Expect = 0.98
Identities = 20/63 (31%), Positives = 20/63 (31%)
Frame = +2
Query: 686 WPXMXXPGHXXPGTPPXAGPXPXPXXXXXXXXXXXXXXXPRXGXPXXAAGXPRSXSXCXA 865
WP P GTP AGP P P P AG P S S C
Sbjct: 67 WPRAEEPQPPIGGTPGAAGP-PAPPSFFPSLELGTSAAPPALEAAAAGAGQPGSPSPCPP 125
Query: 866 AXP 874
A P
Sbjct: 126 AEP 128
>02_02_0119 +
6978697-6979045,6979519-6979581,6979757-6979866,
6979969-6980154,6980266-6980361,6980493-6980564,
6980798-6980909,6982448-6982534,6982680-6983872
Length = 755
Score = 30.7 bits (66), Expect = 1.7
Identities = 24/89 (26%), Positives = 27/89 (30%), Gaps = 1/89 (1%)
Frame = -3
Query: 848 GNAGXPXPXGGXRXGGXXXPPXRPRXGPPRXXTGXGPPXXGXP-GXGGXGXXXWAXXXXX 672
G P P GG G PP + P G PP P G G G
Sbjct: 615 GYGTQPQPQGGYSQGSYGAPPQGQKAPPNTSPYGQAPPPGSAPGGYGQYGYSQNQQGYGA 674
Query: 671 VPXXXXGXXASAXRTGQIRSXPXXXGXGT 585
P AS GQ +S G G+
Sbjct: 675 PPPYPGAPAASHPGYGQQQSYGDPYGSGS 703
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 30.3 bits (65), Expect = 2.3
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 223 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 339
V+ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 4.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 238 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 149
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>06_02_0257 -
13533689-13533714,13533799-13533925,13534013-13534121,
13534193-13534272,13534758-13534979,13536070-13536318,
13537032-13537484,13539834-13540556
Length = 662
Score = 29.1 bits (62), Expect = 5.2
Identities = 17/46 (36%), Positives = 17/46 (36%)
Frame = -3
Query: 839 GXPXPXGGXRXGGXXXPPXRPRXGPPRXXTGXGPPXXGXPGXGGXG 702
G P GG R GG PP PP PP G GG G
Sbjct: 42 GPPGGGGGDRRGGFQLPPDAAPPPPP-----PPPPSSAAAGGGGPG 82
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 9.2
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 110 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 265
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>03_02_0155 -
5974118-5974173,5974242-5974314,5974393-5974500,
5975189-5976914,5977065-5977620,5978008-5978485
Length = 998
Score = 28.3 bits (60), Expect = 9.2
Identities = 17/59 (28%), Positives = 19/59 (32%)
Frame = +1
Query: 712 PXPGXPXXGGPXPVXXRGGPXLGLXGGXXXPPXRXPPXGXGXPAFPXXVXXXPXXXXPP 888
P PG P P + P + G PP R PP A P P PP
Sbjct: 42 PMPGPPSQPPPPQAMYQAHPQYPMPGSLPPPPPR-PPSFAPENALPPSSPPPPSPPPPP 99
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 9.2
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -1
Query: 352 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 185
++PP H + AP P +P+ S P++ + PH S +QM Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,819,162
Number of Sequences: 37544
Number of extensions: 489222
Number of successful extensions: 1446
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1425
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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