Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_F06
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    31   0.29 
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    29   0.90 
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    27   2.7  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   3.6  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   4.8  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    27   4.8  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   6.3  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 211 VRVHRADTGRSSNELDRQTTELERRGMGL-QHLAG 312
           +R H+   GR+  ELDR+ T+L++R   L Q + G
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
 Frame = -3

Query: 240 SASIRTVDSDSRMLACLKCRVRLTTILESGGDSRSY---VARSESIMRDSDVAFSHSAAL 70
           S++ + +DS S          RLT  L SG +S      VA +E + R  D+  +H   L
Sbjct: 23  SSAAQLIDSLSNEEELKYSLNRLTKGLSSGRESARIGFAVALTELLTRTKDIRATHVLDL 82

Query: 69  AIAQVRRNGNKNNISRRHFFF 7
            +     +GN      R F+F
Sbjct: 83  LVKHNTASGNLKGQDERDFYF 103


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -1

Query: 380 SPRRWLQPRLAVPPQASTSVPRTPAKCCSPIP 285
           SP  +  PR    PQ STS P      C P+P
Sbjct: 114 SPHSFSNPRYVAVPQKSTS-PNQVCSYCEPLP 144


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 135 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 37
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 289 FPCVPTQSFVDPIHLKICQYPHGGL 215
           F  +P Q+F    H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 973

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -1

Query: 359  PRLAVPPQASTSVPRTPAKCCSPI 288
            PR  +PPQ ST+VP T +K   PI
Sbjct: 938  PRQLIPPQQSTNVPGT-SKPSGPI 960


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 392 RGERSPRRWLQPRLAVPPQASTSVPRTPAKCCSPIP 285
           + E  P     PR ++PP +  S P  P+K   PIP
Sbjct: 134 QSELRPPTSAPPRPSIPPPSPASAPPIPSK-APPIP 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,003
Number of Sequences: 5004
Number of extensions: 53326
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)