Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_F05
(897 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 29 1.2
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 1.2
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 29 1.2
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 28 2.1
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 27 2.7
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 27 2.7
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.6
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|... 27 3.6
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 3.6
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 4.8
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 26 8.4
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 26 8.4
SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|... 26 8.4
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 26 8.4
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +3
Query: 537 PSPAISATSTRSSN---PRFHTPTTPDLTSISINPLT 638
P P+IS T+T SS H PTTPD + PLT
Sbjct: 273 PKPSISTTTTGSSYRSAESSHAPTTPD--HFKLTPLT 307
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.7 bits (61), Expect = 1.2
Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 4/111 (3%)
Frame = +2
Query: 278 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 457
T T S +T + +S+ Y + + + S P PVT C T+ V
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539
Query: 458 VEGVNVLATPSSSRITIGGLALMHQATLPCDLGYI----NPIIKSPIPYTN 598
V +TP ++ ++ + +T Y P+ +P+ TN
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 590
Score = 27.9 bits (59), Expect = 2.1
Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 6/109 (5%)
Frame = +2
Query: 290 TKSNSVTVQSLPNVSSIIKG--YRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVE 463
T +N T S+P S+ + +V + S P P+T C T+ +
Sbjct: 423 TTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482
Query: 464 GVNVLATPSSSRITIGGLALMHQATLPCDLGYI----NPIIKSPIPYTN 598
V +TP ++ ++ + +T Y P+ +P+ TN
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 531
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 28.7 bits (61), Expect = 1.2
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +2
Query: 278 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 448
TG +T+ QSL N+S S I R N A FPS S +P VDL
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366
Query: 449 DVTVEGVNVLATPSSS 496
DV+ E L+TP S
Sbjct: 367 DVSDEEQRFLSTPLGS 382
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +3
Query: 531 KPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY 644
+PPS A+ + + P P P + + NP TP+
Sbjct: 245 RPPSMALLPSKQSTYWPALAAPVYPSMKDVPNNPFTPF 282
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 27.5 bits (58), Expect = 2.7
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = +3
Query: 624 INPLTPYXKEFAPGLSLRCHQXLHQRIS----PPRHWAWLKGFAPLFQVND 764
+N Y K GL+L L +RI PP W +LK +FQ ND
Sbjct: 109 LNEAEVYLKNKQAGLALNALDRLQRRIDSTTQPPMSWMYLKAQVYIFQ-ND 158
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 525 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 406
I A P +R AS+ TP+ T+A+ QQ GI+R
Sbjct: 9 IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 260 RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 373
R+Y L T ++S + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878
>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
L38|Schizosaccharomyces pombe|chr 2|||Manual
Length = 126
Score = 27.1 bits (57), Expect = 3.6
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -1
Query: 768 VHHSLEIRGRTPLAMPSDEGVRYADGA 688
+HH++ +R ++P+ P VR+ D A
Sbjct: 61 IHHAIIVRTKSPVRRPDGRYVRFDDNA 87
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 540 SPAISATSTRSSNPRFHTPTTPDLTSIS 623
S IS +ST N FH PT TS S
Sbjct: 801 SRTISTSSTNEYNTSFHAPTVSSTTSSS 828
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.8
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +2
Query: 341 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 430
+K RD YL NLEA FPS+ +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.8 bits (54), Expect = 8.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 762 HSLEIRGRTPLAMPSDEGVRYADGAS 685
H +++ G TP +MPS+ Y +GA+
Sbjct: 850 HMVDVGGITPGSMPSNSKAIYEEGAA 875
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -1
Query: 510 PIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 376
P ++E + TL +T+T V + + +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550
>SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 156
Score = 25.8 bits (54), Expect = 8.4
Identities = 14/50 (28%), Positives = 20/50 (40%)
Frame = +2
Query: 590 YTNHPRLNIHFHQSPDAVLXGVRAGVKPPLSSXAPSAYLTPSSLGMAKGV 739
+ N P + F ++ GV PP SS P Y+ AKG+
Sbjct: 14 WENKPEEVVEFPSQGKFIIVGVPGAFTPPCSSQVP-GYIANEKQFAAKGI 62
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 25.8 bits (54), Expect = 8.4
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -1
Query: 747 RGRTPLAMPSDEGVRYADGASDDNGGLTPARTPXSTASGD 628
RG T A+PS GVR + D L+PA AS D
Sbjct: 199 RGNTMPALPSYAGVRNSQENEDRTEALSPALGKRRMASID 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,406,335
Number of Sequences: 5004
Number of extensions: 67553
Number of successful extensions: 258
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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