Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_F05
(897 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 32 0.71
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 31 0.94
11_06_0610 - 25449085-25453284 31 1.2
09_01_0061 + 948663-948708,949638-949993 31 1.2
04_04_1527 - 34167673-34168245 31 1.2
08_02_1296 - 25951758-25951983,25952134-25952159,25952626-259527... 31 1.6
02_04_0452 + 23044190-23045227 29 3.8
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 29 3.8
01_06_0404 + 29098141-29098214,29098459-29098673,29099491-290995... 29 5.0
04_01_0041 - 464695-464850,467485-469029 29 6.6
01_05_0227 - 19512866-19514983 29 6.6
10_01_0153 + 1762333-1762986 28 8.8
08_02_0875 + 22103903-22106293 28 8.8
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 28 8.8
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 31.9 bits (69), Expect = 0.71
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +3
Query: 528 IKPPSPAISATSTR-SSNPR--FHTPTTPDLTSISINPLTP 641
I PPSPA + S+R S +PR F TP T T+ S +P +P
Sbjct: 25 ITPPSPASTPRSSRPSESPRSGFSTPATAPRTAASPSPPSP 65
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 31.5 bits (68), Expect = 0.94
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 546 AISATSTRSSNPRFHTPTTP 605
A S+T+TR S PR H PTTP
Sbjct: 2 AASSTATRLSPPRLHAPTTP 21
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 534 PPSPAISATSTRSSNPRFHTPTTPDLTSIS-INPLTPYXKEFAP 662
PP+P A+S P HTP+ P+ T S +P TP K +P
Sbjct: 618 PPTPESKASSPPPPAPEGHTPSPPESTPPSEKSPPTPESKASSP 661
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 534 PPSPAISATSTRSSNPRFHTPTTPDLT-SISINPLTPYXKEFAP 662
PP+P A+S P HTP+ P T +P TP + +P
Sbjct: 651 PPTPESKASSPPPPTPEGHTPSPPKSTPPTEKSPPTPESESSSP 694
>09_01_0061 + 948663-948708,949638-949993
Length = 133
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 29 LCL*XVSAASAIPSLVNAFSSSKPPQTDNPSAR 127
LC+ VS+ PS N +SS KPP T P+ R
Sbjct: 91 LCVIHVSSKDHRPSQDNPYSSDKPPPTSPPAQR 123
>04_04_1527 - 34167673-34168245
Length = 190
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +2
Query: 572 IKSPIPYTNHPRLNIHFHQSPDAVLXGVRAGVKPPLSSXAPSAYLTPSSLGMAKGVRP 745
++ P+ TN P ++ SP L G A PP++ A SA T S +G RP
Sbjct: 61 LRGPLARTNFPLVSSLPLPSPHYHLPGKAAAAAPPVAGPACSASSTVESSSGPRGPRP 118
>08_02_1296 -
25951758-25951983,25952134-25952159,25952626-25952710,
25952828-25952959,25953037-25953180,25953254-25953312,
25953381-25953687,25954211-25954292,25954369-25954502,
25954587-25954680,25954751-25954874,25955136-25955195
Length = 490
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +3
Query: 528 IKPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGLSLRCHQ 686
I PSPAI+ T ++N +H P DL+ P T EF+PG + +CH+
Sbjct: 331 IDQPSPAIANTIQVATNQLYH-PQQVDLSKEK-QPST----EFSPGQNSKCHK 377
>02_04_0452 + 23044190-23045227
Length = 345
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 481 HPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPP 603
H +L H+ +A SH SR H P + P S PP
Sbjct: 166 HGCLLLHHAGHGHGHAHSHSHSHSRAHNPSTRPPTSAPPPP 206
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 29.5 bits (63), Expect = 3.8
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +2
Query: 284 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWTTADVT 457
TE +N V V L SS GY D + ++ V + K+ V +D TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224
Query: 458 VEGVNVLATPSSSRITIGGLALMHQ 532
+ +N+L P G L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249
>01_06_0404 +
29098141-29098214,29098459-29098673,29099491-29099596,
29099686-29100235,29100332-29100429,29100519-29100764,
29100867-29100981,29101092-29101305,29101402-29101991
Length = 735
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 537 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAP 662
P+P ++A S+R NP PD+T+ ++ + Y + +P
Sbjct: 447 PAPVMAAFSSRGPNPITPQILKPDITAPGVSVIAAYSEAVSP 488
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 245 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 421
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 422 TVD 430
+D
Sbjct: 100 PLD 102
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 462 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 370
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>10_01_0153 + 1762333-1762986
Length = 217
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -1
Query: 780 REACVHHSLEIRGRTPLAMPSDEGVRYADGASDDNGGLTPARTPXSTASGD 628
R C HH+ ++R R + V AD S N + R+P + A+GD
Sbjct: 68 RHPCAHHAKDLRLRRTCCA---DAVAAADDRSPFNPVIVLCRSPAAVAAGD 115
>08_02_0875 + 22103903-22106293
Length = 796
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 537 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAP 662
P+P ++A S R NP+ PDL + +N L + P
Sbjct: 506 PAPVVAAFSARGPNPQSPEILKPDLIAPGLNILAAWPSGVGP 547
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 28.3 bits (60), Expect = 8.8
Identities = 21/86 (24%), Positives = 36/86 (41%)
Frame = +2
Query: 236 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 415
Q I + ++ L N TV + N + GY+ +N+ + PSLK
Sbjct: 198 QVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK- 256
Query: 416 PVTVDLCWTTADVTVEGVNVLATPSS 493
D C T ++ +EG++ L S+
Sbjct: 257 ----DFCEPTVEM-LEGMSALKALST 277
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,067,460
Number of Sequences: 37544
Number of extensions: 522835
Number of successful extensions: 1638
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1638
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -