Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_E21
(882 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 128 1e-30
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 82 9e-17
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 54 3e-08
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 50 3e-07
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 48 2e-06
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 47 3e-06
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 46 5e-06
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 46 5e-06
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 46 9e-06
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 45 1e-05
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 45 1e-05
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 44 2e-05
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 44 4e-05
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 43 7e-05
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 42 9e-05
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 39 8e-04
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 0.001
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 38 0.002
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 37 0.003
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 36 0.006
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 36 0.006
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 36 0.008
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 35 0.013
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 35 0.018
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 34 0.023
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 34 0.023
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 33 0.054
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 33 0.071
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 32 0.12
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 32 0.12
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 31 0.29
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 30 0.50
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 29 0.88
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 27 2.7
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 27 3.5
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 27 3.5
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 26 8.2
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 26 8.2
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 26 8.2
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 26 8.2
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 26 8.2
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 128 bits (309), Expect = 1e-30
Identities = 58/120 (48%), Positives = 85/120 (70%)
Frame = +2
Query: 122 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLV 301
E GK+F+GGL+WET+ ++L+ YF ++GEV+DC VM++S +GRSRGFGF+TF +P VN V
Sbjct: 161 EDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV 220
Query: 302 LQNGPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVM 481
+ H LDG+ IDPK PR Q+ K+F+GG+P + TE + R FF ++G+V+
Sbjct: 221 MSK-EHHLDGKIIDPKRAIPREEQEKT-----AKMFVGGVPGDCTEEEFRNFFNQFGRVL 274
Score = 67.7 bits (158), Expect = 2e-12
Identities = 27/90 (30%), Positives = 53/90 (58%)
Frame = +2
Query: 95 RMNPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 274
R P + ++ K+FVGG+ + ++E + +F+++G V+D +M + ++GR RGFGFVT+
Sbjct: 236 RAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTY 295
Query: 275 ADPSLVNLVLQNGPHQLDGRTIDPKPCNPR 364
+ S V + + G+ ++ K P+
Sbjct: 296 ENESAVEATMSQPYITIHGKPVEVKRATPK 325
Score = 36.7 bits (81), Expect = 0.004
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 456 FSDAMGRSWXVVIMYDQEKKKSRGFGFLSFEDEISVERVXQEHFI 590
F + GR +M D++ + RGFGF+++E+E +VE + +I
Sbjct: 266 FFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYI 310
Score = 30.7 bits (66), Expect = 0.29
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 429 TLPKPISGYFSDAMGRSWXVVIMYDQEKKKSRGFGFLSFEDEISVERV-XQEHFI 590
T + YF + G +M D +SRGFGFL+F++ V V +EH +
Sbjct: 174 TTDDSLRDYF-EQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHL 227
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 82.2 bits (194), Expect = 9e-17
Identities = 47/138 (34%), Positives = 69/138 (50%), Gaps = 13/138 (9%)
Frame = +2
Query: 104 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 283
P D +E +FVG LSW + L + F YG ++ V+ + +SGRS+G+G+V F P
Sbjct: 255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP 314
Query: 284 SLVN-LVLQNGPHQLDGRTI-----DPKPCNPRTLQKPKRGG-----GYPK--VFLGGLP 424
V NG ++DGR + +P+P NP+ + + G P VF+G L
Sbjct: 315 EAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLS 374
Query: 425 SNVTETDLRVFFGRYGKV 478
N TE DL FG G +
Sbjct: 375 FNATEDDLSTAFGGCGDI 392
Score = 49.6 bits (113), Expect = 6e-07
Identities = 28/96 (29%), Positives = 47/96 (48%)
Frame = +2
Query: 107 DMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 286
D + +FVG LS+ ++++L F G++ + + +SGR +GFG+VTF+D
Sbjct: 359 DQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDID 418
Query: 287 LVNLVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGGG 394
++ H + GR PC P+ GGG
Sbjct: 419 SAKKCVEMNGHFIAGR-----PCR-LDFSTPRTGGG 448
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 54.0 bits (124), Expect = 3e-08
Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 15/130 (11%)
Frame = +2
Query: 134 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA---DPSLVNLVL 304
LFV L+++T Q++L +FS G + VV+ N E+G +RG+GFVTF+ D L
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 305 QNGPHQLDGRTIDPKPCNPR-----------TLQKPKRGGGYPKVFLGGLPSNVTETD-L 448
+N +L GR + PR ++K R P++ + LP ++ + L
Sbjct: 67 KN--KKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHL 124
Query: 449 RVFFGRYGKV 478
F ++GKV
Sbjct: 125 EPHFSKFGKV 134
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +3
Query: 426 RTLPKPISGYFSDAMGRSWXVVIMYDQEKKKSRGFGFLSFEDEISVERVXQE 581
+T ++ +FSD +G V++ + E ++RG+GF++F +R +E
Sbjct: 15 QTKQDDLTNFFSD-VGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKE 65
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 50.4 bits (115), Expect = 3e-07
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Frame = +2
Query: 110 MDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSL 289
M D K +FVG L++E +E L RYF G + ++++ ++ +GF ++ F D
Sbjct: 264 MPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMG 323
Query: 290 VN-LVLQNGPHQLDGRTI---DPKPCNPRTLQKPKRG 388
V+ +L N +GRT+ K P+++ + KRG
Sbjct: 324 VDKALLLNEKKMPEGRTLRIMRAKSTKPKSITRSKRG 360
Score = 31.1 bits (67), Expect = 0.22
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +3
Query: 393 DTLRCSLAG--CHRTLPKPISGYFSDAMGRSWXVVIMYDQEKKKSRGFGFLSFEDEISVE 566
DT RC G +P+ YF D G V I+ D + +GF ++ F+D + V+
Sbjct: 267 DTKRCVFVGNLAFEAEEEPLWRYFGDC-GSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVD 325
Query: 567 R 569
+
Sbjct: 326 K 326
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 47.6 bits (108), Expect = 2e-06
Identities = 23/57 (40%), Positives = 34/57 (59%)
Frame = +2
Query: 113 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 283
++D K LFVG L ++S E LQ +F R G+V + + SGR +G+ FV F +P
Sbjct: 87 NNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINP 143
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 47.2 bits (107), Expect = 3e-06
Identities = 17/66 (25%), Positives = 40/66 (60%)
Frame = +2
Query: 113 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 292
D + +++G L ++ +++++ FS +GE +D ++++ E+G+S+GF F+ + D
Sbjct: 26 DYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRST 85
Query: 293 NLVLQN 310
L + N
Sbjct: 86 VLAVDN 91
Score = 29.1 bits (62), Expect = 0.88
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 456 FSDAMGRSWXVVIMYDQEKKKSRGFGFLSFEDEIS 560
FS+ G + ++ D+E KS+GF FL +ED+ S
Sbjct: 51 FSE-FGEPVDINLVRDKETGKSKGFAFLKYEDQRS 84
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 46.4 bits (105), Expect = 5e-06
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +2
Query: 107 DMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 286
D + + ++VG + + + E LQ +F+ G V ++ + +G +GF ++ F++PS
Sbjct: 48 DKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPS 107
Query: 287 LV-NLVLQNG 313
LV N +L NG
Sbjct: 108 LVPNALLLNG 117
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 46.4 bits (105), Expect = 5e-06
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 10/111 (9%)
Frame = +2
Query: 116 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF--ADPSL 289
D +LFVG L + + E+L + FS Y ++ V+++ E G++RGFGFV+F +D L
Sbjct: 26 DPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFL 84
Query: 290 VNLVLQNG------PHQLDGRTIDPKP--CNPRTLQKPKRGGGYPKVFLGG 418
+NG P +L T D KP N +T+ R Y + G
Sbjct: 85 KAWREKNGKYIGSRPVKLSRATSDVKPNEVNEKTIDSKIRNSLYSRTIHHG 135
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +3
Query: 492 IMYDQEKKKSRGFGFLSFED 551
++ D+E K +RGFGF+SF+D
Sbjct: 61 VVRDREGK-TRGFGFVSFKD 79
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 45.6 bits (103), Expect = 9e-06
Identities = 19/49 (38%), Positives = 32/49 (65%)
Frame = +2
Query: 134 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 280
LFVG L +ET+ +L+ +F + G++ +M ++G+ +GFGFV F D
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPD 278
Score = 36.3 bits (80), Expect = 0.006
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 14/121 (11%)
Frame = +2
Query: 158 ETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNGPHQLDGRT 337
E S+EN++ + I + M + +++GF +V FA + L LQ L+GR
Sbjct: 135 EVSEENIKPITTEQITRIH-MPMSKEKRFQNKGFAYVDFATEDALKLALQCSEKALNGRN 193
Query: 338 I--------DPKPCNP-RTLQKPKRGGGYPK-----VFLGGLPSNVTETDLRVFFGRYGK 475
I +P P TL K K +F+G L T+ DL+ FG+ G+
Sbjct: 194 ILIKSNTDFSGRPSKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQ 253
Query: 476 V 478
+
Sbjct: 254 I 254
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 45.2 bits (102), Expect = 1e-05
Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 4/130 (3%)
Frame = +2
Query: 101 NPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 280
+P + G +F+ L + L FS +G+++ C V + E G ++G+GFV F
Sbjct: 159 DPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDS 217
Query: 281 PSLVNLVLQ--NGPHQLDGRTIDPKPCNPRTLQKPKRG--GGYPKVFLGGLPSNVTETDL 448
N ++ NG D + + R Q + V++ L + +TE +
Sbjct: 218 VESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEF 277
Query: 449 RVFFGRYGKV 478
FG++G++
Sbjct: 278 SDLFGQFGEI 287
Score = 42.7 bits (96), Expect = 7e-05
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +2
Query: 134 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVN-LVLQN 310
LF+ L E E L+ FS +G + +M + E G+S+GFGFV + P N V +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEM 424
Query: 311 GPHQLDGRTI 340
L G+ +
Sbjct: 425 NQRMLAGKPL 434
Score = 33.9 bits (74), Expect = 0.031
Identities = 13/49 (26%), Positives = 30/49 (61%)
Frame = +2
Query: 134 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 280
+++ L E +++ F ++GE+ ++K+ ++ + RGFGFV +A+
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYAN 310
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 45.2 bits (102), Expect = 1e-05
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Frame = +2
Query: 104 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 283
P+ ++ LFV G++ ++ LQ+ FS++G V +M+ + SRGFGF++F+
Sbjct: 93 PEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTV 152
Query: 284 SLVNLVLQN-GPHQLDGRTIDPKPCNPRTLQKPKRG 388
+ N + GR ++ + P G
Sbjct: 153 EEATSAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPG 188
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +3
Query: 486 VVIMYDQEKKKSRGFGFLSF 545
V IM + K SRGFGFLSF
Sbjct: 130 VRIMREPVTKASRGFGFLSF 149
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 44.4 bits (100), Expect = 2e-05
Identities = 17/47 (36%), Positives = 32/47 (68%)
Frame = +2
Query: 134 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 274
+F+ LS++T + +++R F+RYG + V++N +G+S G+ FV F
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVF 148
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 43.6 bits (98), Expect = 4e-05
Identities = 20/54 (37%), Positives = 33/54 (61%)
Frame = +2
Query: 119 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 280
D+ L V LS +T +E L+ F R+G + + K+ E+GR++GF FV++ D
Sbjct: 199 DDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYD 252
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 42.7 bits (96), Expect = 7e-05
Identities = 19/47 (40%), Positives = 31/47 (65%)
Frame = +2
Query: 134 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 274
LFV L+ T E+L+ FSR+G++I C V+++ E+G S + F+ F
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEF 292
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 42.3 bits (95), Expect = 9e-05
Identities = 18/62 (29%), Positives = 37/62 (59%)
Frame = +2
Query: 122 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLV 301
+KG L+VG L ++ ++ YFS++G V+ + +N ++G S+ + F+ F + N+V
Sbjct: 103 KKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVV 162
Query: 302 LQ 307
+
Sbjct: 163 AE 164
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 39.1 bits (87), Expect = 8e-04
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +2
Query: 134 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 274
++VG L W TS NL F+ G VI + +GRS+GFG V F
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARI-AYEPTGRSKGFGVVQF 327
Score = 31.9 bits (69), Expect = 0.12
Identities = 12/52 (23%), Positives = 31/52 (59%)
Frame = +2
Query: 122 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA 277
++ +++VG LS++ L+ + + G V++C ++ N +G S+G + ++
Sbjct: 64 QERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL-NLPNGLSKGCAIIEYS 114
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 38.3 bits (85), Expect = 0.001
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Frame = +2
Query: 134 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 313
++VG + +E ++E + F + G V ++ + ESG+ +G+GF + DP+ ++N
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 314 PHQLDG----RTIDPKPCNPRTLQK---PKRGGGYPKVF 409
+ G R P R L K P R G YP+ +
Sbjct: 67 NNYDAGTRRLRVDFPTADQIRRLDKLLGPSRYGYYPQSY 105
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 37.9 bits (84), Expect = 0.002
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +2
Query: 119 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 286
D K K+++ L ++ + +G+++ ++KN G S+GF F F +PS
Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPS 362
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 37.1 bits (82), Expect = 0.003
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +2
Query: 134 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 274
LFVG L + L FS G+++ + E+GRS+G+GFV++
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSY 147
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 36.3 bits (80), Expect = 0.006
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +2
Query: 134 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 280
+FVG + ++ S++ + F++ G V ++ + E+G +G+GF F D
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFD 57
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 36.3 bits (80), Expect = 0.006
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 134 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 280
+++ GL TS ENL Y +R+G+V + + E+ +G+GF F +
Sbjct: 298 VYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEE 346
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 404 VFLGGLPSNVTETDLRVFFGRYGKV 478
V++ GLP N ++ +L ++ R+GKV
Sbjct: 298 VYIRGLPPNTSDENLLLYTNRFGKV 322
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 35.9 bits (79), Expect = 0.008
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +2
Query: 131 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 280
+LFVG + + ++E++ +F YG+++DC +M GFGFV D
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLM--------NGFGFVEVED 46
Score = 27.1 bits (57), Expect = 3.5
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2
Query: 401 KVFLGGLPSNVTETDLRVFFGRYGKVM 481
++F+G +P T D+ FF YG+++
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQIL 31
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 35.1 bits (77), Expect = 0.013
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 134 LFVGGLSWETSQENLQRYF-SRYGEVIDCVVMKNSESGRSRGFGFVTFAD 280
+FVG LS ++ ++ F SRY +M + ++ SRG+GFV F D
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTD 237
Score = 33.5 bits (73), Expect = 0.041
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +2
Query: 104 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 280
P D +FVGGLS S+E L+ F +GE++ + +G GFV F +
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPP------GKGCGFVQFVN 347
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 492 IMYDQEKKKSRGFGFLSFEDE 554
IM D + SRG+GF+ F DE
Sbjct: 218 IMTDPQTNVSRGYGFVRFTDE 238
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 34.7 bits (76), Expect = 0.018
Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +2
Query: 131 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP-SLVNLVLQ 307
+L V + + + E+++ F +G+ I+ V ++ + RS+GFG++ + +P S N + +
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGD-IEFVHLQRDDQNRSKGFGYIQYRNPISARNALEK 399
Query: 308 NGPHQLDGRTI 340
L GR +
Sbjct: 400 MNGFDLAGRNM 410
Score = 34.3 bits (75), Expect = 0.023
Identities = 16/64 (25%), Positives = 32/64 (50%)
Frame = +2
Query: 113 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 292
++ ++ +FV L+ + L +F + G V D ++++ SGRS+G +V F V
Sbjct: 235 EERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSV 294
Query: 293 NLVL 304
+
Sbjct: 295 QAAI 298
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 34.3 bits (75), Expect = 0.023
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 170 ENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 283
+ L+ FS++G + C + + S+G+GFV+F+ P
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHP 472
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 34.3 bits (75), Expect = 0.023
Identities = 23/75 (30%), Positives = 35/75 (46%)
Frame = +2
Query: 140 VGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNGPH 319
VG LS++ ++ +L +F I V+ +E RSRGFG+V F ++ L
Sbjct: 98 VGNLSFDLTENDLGDFFGEGVTSIRLVIDPLTE--RSRGFGYVEFETADTLSAALALSGE 155
Query: 320 QLDGRTIDPKPCNPR 364
L GR + PR
Sbjct: 156 DLMGRPVRITVAEPR 170
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 33.1 bits (72), Expect = 0.054
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +2
Query: 131 KLFVGGLSWETSQENLQRYFSRYGEVIDC-VVMKNSESGRSRGFGFVTF 274
+++VGGLS +L+ FSR+G V + ++ K++ G + F ++ F
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNF 54
Score = 28.7 bits (61), Expect = 1.2
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 401 KVFLGGLPSNVTETDLRVFFGRYGKV 478
++++GGL S++ +DL F R+G V
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSV 31
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 32.7 bits (71), Expect = 0.071
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 104 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEV 208
P +DE ++VG + S E + ++FS+YG+V
Sbjct: 9 PGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQV 43
Score = 31.5 bits (68), Expect = 0.16
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 161 TSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 274
T + L+ FS +G ++ ++ SG S+G+GFV F
Sbjct: 395 TCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAF 432
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 31.9 bits (69), Expect = 0.12
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 11/103 (10%)
Frame = +2
Query: 203 EVIDCVVMKNSESG---RSRGFGFVTFADPSLVNLVLQNGP-HQLDGRTIDPK------- 349
E++ CV ES + F++F DPS Q+ +L R + K
Sbjct: 130 EILSCVRTGPIESAWILPEKNCAFISFLDPSHATAFFQDAALKRLTIRGTEVKVGWGKNS 189
Query: 350 PCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRVFFGRYGKV 478
N L ++ G VFLG LP+ +TE ++R +G +
Sbjct: 190 ASNSSVLLAVQQSGACRNVFLGNLPNGITEDEIREDLEPFGPI 232
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 31.9 bits (69), Expect = 0.12
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Frame = +2
Query: 173 NLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNGPHQLDGRTIDPKP 352
++ + FS YG V+D V + +R F +V P + LQ L+ +
Sbjct: 681 DITKLFSAYGNVVD-VRFPSLRYNTNRRFCYVQMRKPDEAHNALQLHKKLLEEKYPIQVF 739
Query: 353 CNPRTLQKPKRGGGYP--KVFLGGLPSNVTETDLRVFFGRYGKV 478
+ + P+ G Y ++++ + V E D+ FF YG+V
Sbjct: 740 ISDPLRRTPRSGAVYEGRELYVTNIDFKVNEKDVETFFRDYGQV 783
Score = 26.2 bits (55), Expect = 6.2
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +2
Query: 404 VFLGGLPSNVTETDLRVFFGRYGKVM 481
V + LPS+++E +L++FF G ++
Sbjct: 592 VLVTNLPSDISENELKIFFKDCGNII 617
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 30.7 bits (66), Expect = 0.29
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 404 VFLGGLPSNVTETDLRVFFGRYGKV 478
VF+G LPS+ E ++ FG++GK+
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKI 325
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 29.9 bits (64), Expect = 0.50
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 176 LQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ 307
L FS YG V+D V +K + + RG V F DPS + ++
Sbjct: 24 LYMLFSTYGTVVDIVALK---TPKMRGQAHVVFFDPSAAAIAMK 64
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 29.1 bits (62), Expect = 0.88
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 134 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 274
++VG LS+ T++E + FS+ GE+ ++ + + GF FV +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEY 80
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 27.5 bits (58), Expect = 2.7
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 12/61 (19%)
Frame = +2
Query: 134 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKN------------SESGRSRGFGFVTFA 277
++V GLS + E L+ F Y + +++ E R RGFGFV+FA
Sbjct: 207 IYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVSFA 266
Query: 278 D 280
+
Sbjct: 267 N 267
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 507 EKKKSRGFGFLSFEDEISVERVXQE 581
E+++ RGFGF+SF + R +E
Sbjct: 253 EQRRGRGFGFVSFANAEDQSRAIEE 277
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 188 FSRYGEVIDCVVMKNSESGRSRGFGFVTF 274
FS+YG+VIDC ++ S + F F+ F
Sbjct: 386 FSKYGKVIDCKIIHQS---KKPAFAFLRF 411
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 404 VFLGGLPSNVTETDLRVFFGRYGKV 478
+FLGG+ +V E LR F R+G V
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSV 432
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 25.8 bits (54), Expect = 8.2
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 349 AVQSSHSSKTE--TWRWIP*GVPWRAAIERYRNRS 447
+++ SHSS+ T IP VPWR A +YR S
Sbjct: 145 SLKRSHSSQLAHTTSSEIPGSVPWRRAGIKYRKNS 179
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 134 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 274
LF+ LS++ + E + F RYG V ++ + ++RG FV +
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQ---IRLGNTVQTRGTAFVVY 57
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 25.8 bits (54), Expect = 8.2
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Frame = +2
Query: 101 NPDMDDDEKGKLFV---GGLSWETSQENLQRYFSRYGEVIDCVVMKNS-ESGRSRGFGFV 268
N D+ D + L++ L W+ + + R RYG I C+ K GR + F
Sbjct: 154 NHDVADRQDNSLYLLNTSSLVWQKANASGARPSGRYGHTISCLGSKICLFGGRLLDYYFN 213
Query: 269 TFADPSLVNLVLQNGPHQLDGRTIDPKP 352
L NL + +L DP P
Sbjct: 214 DLVCFDLNNLNTSDSRWELASVVNDPPP 241
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -3
Query: 496 IMTTXHDLPIASEKYPEIGFGNVRWQPAKEHLR 398
I+ +D PI +KYP+I + + + A + +R
Sbjct: 1366 ILNLSYDRPINVDKYPKIDYNLMDYSSATDRIR 1398
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Frame = +2
Query: 122 EKGKLFVGGLSWETS-QENLQ-----RYFSRYGEVIDCVVMKNSESGRSRG 256
+K +V GLS + + +EN+ YF +YG++I + K + + + G
Sbjct: 114 QKNLAYVNGLSPKVANEENINVLKGPEYFGQYGKIIKIAINKKAAANSANG 164
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,152,221
Number of Sequences: 5004
Number of extensions: 63075
Number of successful extensions: 226
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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