Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_E11
(930 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 37 0.004
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 35 0.014
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 32 0.13
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.23
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.23
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4... 31 0.31
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.40
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.53
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.6
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 28 1.6
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 27 5.0
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 6.6
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 26 8.7
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 37.1 bits (82), Expect = 0.004
Identities = 18/54 (33%), Positives = 19/54 (35%)
Frame = -2
Query: 929 KXPPPQPPXXNPPXKXPPXXPXLKPPGXPXXPPXNAXPPRITGGXXPAGKXGPP 768
K PPP PP P P P P PP PP + G P PP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 31.5 bits (68), Expect = 0.18
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -2
Query: 923 PPPQPPXXNPPXKXPPXXPXLKPPGXPXXPPXNAXPPRITGG 798
PPP P PP PP P + G P PP PP ++ G
Sbjct: 752 PPPAPIMGGPPPPPPP--PGVAGAGPPPPPPP---PPAVSAG 788
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 35.1 bits (77), Expect = 0.014
Identities = 24/55 (43%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Frame = +1
Query: 772 GPXXPAGXXP-PVIRGGXA-FXGGXXGXPGGL---SXGXXGGXFXGGFXXGGWGG 921
GP P G P RGG F GG G GG S G GG GGF G GG
Sbjct: 123 GPKKPKGARNGPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGG 177
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 31.9 bits (69), Expect = 0.13
Identities = 16/57 (28%), Positives = 19/57 (33%)
Frame = -2
Query: 923 PPPQPPXXNPPXKXPPXXPXLKPPGXPXXPPXNAXPPRITGGXXPAGKXGPPXGXXP 753
PP PP PP P + PP PP + P I P + P P
Sbjct: 130 PPTPQSELRPPTSAPPR-PSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185
Score = 30.7 bits (66), Expect = 0.31
Identities = 19/60 (31%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Frame = -2
Query: 923 PPPQPPXXNPPXKXPPXXPXLK---PPGXPXXPPXNAXPPRITGGXXPAGKXGPPXGXXP 753
PPP P P K PP P L PP P PP + PP G P
Sbjct: 172 PPPAQPAA--PVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPAGHAP 229
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 31.1 bits (67), Expect = 0.23
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = +1
Query: 832 GGXXGXPGGLSXGXXG-GXFXGGFXXG--GWGGG 924
GG G PGG G G G GGF G G+GGG
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGG 257
Score = 31.1 bits (67), Expect = 0.23
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = +1
Query: 832 GGXXGXPGGLSXGXXG-GXFXGGFXXG--GWGGG 924
GG G PGG G G G GGF G G+GGG
Sbjct: 231 GGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.1 bits (67), Expect = 0.23
Identities = 19/54 (35%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Frame = -2
Query: 923 PPPQPPXXNP--PXKXPPXXPXLKPPGXPXXPPXNAXPPRITGGXXPAGKXGPP 768
P P PP P P PP P P G P PP P PAG P
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAP--IAPPLPAGMPAAP 467
Score = 29.1 bits (62), Expect = 0.93
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = -2
Query: 920 PPQPPXXNPPXKXPPXXPXLKPPGXPXXPPXNAXPP 813
PP P + P PP P PP P P A PP
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAP--AAPP 448
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Frame = -2
Query: 923 PPPQPPXXNPPXKXP--PXXPXLKPPGXPXXPPXNAX-PPRITGGXXPAGKXGPP 768
PPP PP N P P PP P P PP ++ + PP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPP 392
Score = 27.9 bits (59), Expect = 2.2
Identities = 19/63 (30%), Positives = 20/63 (31%), Gaps = 6/63 (9%)
Frame = -2
Query: 923 PPPQPPXXNPPXKXPPXXPXLKP------PGXPXXPPXNAXPPRITGGXXPAGKXGPPXG 762
PP P PP P P P P P PP P + G PA PP
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAG-MPAAPPLPPAA 473
Query: 761 XXP 753
P
Sbjct: 474 PAP 476
Score = 27.5 bits (58), Expect = 2.8
Identities = 18/58 (31%), Positives = 19/58 (32%), Gaps = 4/58 (6%)
Frame = -2
Query: 929 KXPPPQPPXXNPPXKXPPXXPXLKPPGXPXXPPXNAXPPRITGG----XXPAGKXGPP 768
K PPP PP PP P PP PPR P G+ PP
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPP----PPRSNAAGSIPLPPQGRSAPP 362
Score = 27.1 bits (57), Expect = 3.8
Identities = 21/74 (28%), Positives = 24/74 (32%), Gaps = 8/74 (10%)
Frame = -2
Query: 923 PPPQPPXXN-----PPXKXP-PXXPXLKPP--GXPXXPPXNAXPPRITGGXXPAGKXGPP 768
PPP PP N PP P P P P PP R++ A K PP
Sbjct: 253 PPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPP 312
Query: 767 XGXXPXHQRGTXAP 726
P + P
Sbjct: 313 PPPPPSRRNRGKPP 326
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Frame = -2
Query: 920 PPQPPXXNPPXKXP----PXXPXLKPP--GXPXXPPXNAXPPR 810
PP P PP + P P P + PP G PP + PPR
Sbjct: 233 PPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNS--PPR 273
>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
Did4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 30.7 bits (66), Expect = 0.31
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 208 VRVHRADTGRSSNELDRQTTELERRGMGL-QHLAG 309
+R H+ GR+ ELDR+ T+L++R L Q + G
Sbjct: 18 LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.3 bits (65), Expect = 0.40
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Frame = -2
Query: 923 PPPQPPXXNPPXKXPPXXPXLKPP--GXPXXPPXNAXPP 813
P P+P PP P P + P G P PP + PP
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218
Score = 27.1 bits (57), Expect = 3.8
Identities = 17/58 (29%), Positives = 20/58 (34%), Gaps = 6/58 (10%)
Frame = -2
Query: 923 PPPQPPXXNPPXKXPPXXPXLKPPGXPXXP---PXNAXP---PRITGGXXPAGKXGPP 768
P P+P PP P P + P P P A P P + PA PP
Sbjct: 1103 PVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPP 1160
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/44 (34%), Positives = 15/44 (34%), Gaps = 7/44 (15%)
Frame = -2
Query: 923 PPPQP-------PXXNPPXKXPPXXPXLKPPGXPXXPPXNAXPP 813
PPP P P PP PP P KP P PP
Sbjct: 970 PPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPP 1013
Score = 26.2 bits (55), Expect = 6.6
Identities = 18/63 (28%), Positives = 21/63 (33%), Gaps = 6/63 (9%)
Frame = -2
Query: 923 PPPQPPXXNPPXKXPPXXPXLKPP---GXPXXPPXNAXP---PRITGGXXPAGKXGPPXG 762
P P+P PP P P + P P P A P P + PA G P
Sbjct: 1122 PVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPV 1181
Query: 761 XXP 753
P
Sbjct: 1182 PKP 1184
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.9 bits (64), Expect = 0.53
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 923 PPPQPPXXNPPXKXPPXXP 867
PPP PP PP + PP P
Sbjct: 11 PPPPPPGFEPPSQPPPPPP 29
Score = 29.1 bits (62), Expect = 0.93
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -2
Query: 908 PXXNPPXKXPPXXPXLKPPGXPXXPP 831
P NPP PP P +PP P PP
Sbjct: 5 PPGNPPPPPPP--PGFEPPSQPPPPP 28
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -2
Query: 923 PPPQPPXXNPPXKXPPXXPXLKPPG 849
PPP PP P PP P PPG
Sbjct: 10 PPPPPPPGFEPPSQPPPPP---PPG 31
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -2
Query: 923 PPPQPPXXNPPXKXPPXXPXLKPP 852
PPP PP PP PP P PP
Sbjct: 9 PPPPPP---PPGFEPPSQPPPPPP 29
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -2
Query: 920 PPQPPXXNPPXKXPPXXPXLKPPGXPXXPP 831
PP PP PP PP P + P G P PP
Sbjct: 1707 PPPPPMSVPP---PPSAPPM-PAGPPSAPP 1732
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = -2
Query: 923 PPPQPPXXNPPXKXPPXXPXLKPPGXPXXP-PXNAXP 816
PPP P PP PP PP P P P ++ P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAG--PPSAPPPPLPASSAP 1741
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/55 (27%), Positives = 18/55 (32%)
Frame = -2
Query: 917 PQPPXXNPPXKXPPXXPXLKPPGXPXXPPXNAXPPRITGGXXPAGKXGPPXGXXP 753
P P PP + P P PP + PP + PAG P P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPP-SAPPMPAGPPSAPPPPLP 1736
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/45 (31%), Positives = 16/45 (35%)
Frame = -2
Query: 920 PPQPPXXNPPXKXPPXXPXLKPPGXPXXPPXNAXPPRITGGXXPA 786
PPQ PP P P P PP A PP + P+
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPS-APPPPLPASSAPS 1742
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 150 GGDSRSYVARSESIMRDSDVAFSHSAALAIASSEEKPVTRII 25
G + SY+ R E + ++S+ + SSEE PV +I+
Sbjct: 1755 GSNKSSYMERLEKLKQNSERHLQSVGGKKVYSSEETPVNKIL 1796
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 286 FPCVPTQSFVDPIHLKICQYPHGGL 212
F +P Q+F H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = -2
Query: 920 PPQPPXXNPPXKXPPXXPXLKPPGXPXXPPXNAXPP 813
PP P PP P P L P PP A PP
Sbjct: 500 PPGVPL--PPIPGAPGMPNLNMSQPPMVPPGMALPP 533
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 6/42 (14%)
Frame = -2
Query: 923 PPPQPPXXNPPXKXPPXXPXLK------PPGXPXXPPXNAXP 816
PPP PP N P P ++ PP PP A P
Sbjct: 206 PPPPPPQQNYPPAASSSAPPMQYQQTAYPPQQAPYPPVQAYP 247
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,186
Number of Sequences: 5004
Number of extensions: 48079
Number of successful extensions: 245
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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