Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_E08
(848 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1130 + 30602452-30602712,30603033-30603950,30605501-306055... 31 1.5
02_05_0969 + 33165396-33165935,33166352-33166883,33166988-331672... 30 2.7
03_05_0545 + 25419031-25420758 29 4.7
02_05_0436 - 28971733-28972020,28972178-28972525,28972738-289729... 29 4.7
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 29 6.2
07_03_1735 + 29126170-29126227,29126368-29126711,29126790-291269... 28 8.2
04_04_1193 + 31634043-31634349,31634685-31634847,31635048-316366... 28 8.2
>03_05_1130 +
30602452-30602712,30603033-30603950,30605501-30605548,
30605629-30606072
Length = 556
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 256 DTACCVKPVLPKFS*KKPGFCHLPCIFEFSGSNLMTVL 143
D + CV +L F P H+ +FEF G NL+T++
Sbjct: 121 DDSRCVVKLLDHFKHSGPNGNHVCMVFEFLGDNLLTLI 158
>02_05_0969 +
33165396-33165935,33166352-33166883,33166988-33167242,
33167515-33167606,33167745-33167942,33168049-33168240,
33168341-33168562,33168858-33169024,33169117-33169210,
33169308-33169364,33169459-33169587,33169681-33169752,
33170180-33170293,33170419-33170580,33170666-33170794,
33171057-33171158,33171266-33171342,33171470-33171592,
33171666-33172227
Length = 1272
Score = 29.9 bits (64), Expect = 2.7
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Frame = +3
Query: 516 KEMLAVLAAVTEVIKEQGGKETTTEYFAALMETL-----KASELEDNLV--ATITLLSMG 674
+ + A AA+ + +++QG T YFAA L + D V A + LS
Sbjct: 48 QHLCATAAAMAQAVRDQGVAATPVAYFAAAAAALAPLARAGAGAADRHVSGALLAFLSAA 107
Query: 675 IKAVPQAVLRKQFR 716
+ A+P AV R + R
Sbjct: 108 VPALPPAVARARGR 121
>03_05_0545 + 25419031-25420758
Length = 575
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 576 ETTTEYFAALMETLKASELEDNLVATITLLSMG 674
+T +EYF A +E L A +A +TLLS+G
Sbjct: 133 DTASEYFCASLEGLSAELRLPPAIAGVTLLSLG 165
>02_05_0436 -
28971733-28972020,28972178-28972525,28972738-28972920,
28973096-28973170,28973238-28973392,28973540-28974043,
28975889-28975964
Length = 542
Score = 29.1 bits (62), Expect = 4.7
Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 8/170 (4%)
Frame = +3
Query: 276 TYGHKSNKTKSDAENELTIVKELENMSVKTGDEGSESEY----SGTLRSGTFKT--FQTF 437
T+ + K +SD L +++L++M ++ D ++EY SG+ +G K +
Sbjct: 243 TFEIMTPKARSDVNVNLPALQKLDSMLIEVLDSMVDTEYWYVESGSRANGRGKKNGLRQT 302
Query: 438 ASDWSQCSNISFHKLLNRFDSNNALHKEMLAVLAAVTEVIKEQGGKETTTEYFAALMETL 617
W + L++F N + + L+ A + E + TTEY L
Sbjct: 303 KKWWLPSPRVP-DIGLSQFQRNRLVFQAKLSGRAGLGEDLYH----AITTEYIPIEEIFL 357
Query: 618 KAS-ELEDNLVATITLLSMGIKAVPQAVL-RKQFRTPQQHLWNYSRSMLS 761
S + E ++ T+ L + A Q + K ++P +H WN+ + S
Sbjct: 358 SLSLKTEHTVLETMNRLEGAVFAWNQRISEEKSKKSPGRHSWNFMKDSSS 407
>04_04_1144 +
31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 28.7 bits (61), Expect = 6.2
Identities = 38/135 (28%), Positives = 56/135 (41%), Gaps = 1/135 (0%)
Frame = +3
Query: 243 QQAVSKHEAMMTYGHKSNKTKSDAENELTIVKELENMSVKTGDEGSESEYSGTLRSGTFK 422
+QA S HE + + +KSDAE T ++LEN + T +E E L K
Sbjct: 573 EQAHSVHERSLELESLLHTSKSDAEVAHTRTQDLEN-ELNTANE-KFKEVEADLEQYRSK 630
Query: 423 TFQTFASDWSQCSNISFHKLLNRFDSNNALHKEMLAVLAAVTEVIKEQGGKETTTEYFAA 602
Q SD + L +S + KE++ L +TE K+ + EY
Sbjct: 631 VSQ--LSDELEAYQTKAASLEAVMESASEKEKELVESLGQITEEKKKL--ELLVLEYEEK 686
Query: 603 LMETLKASE-LEDNL 644
E LK + LE+ L
Sbjct: 687 TEEYLKEKQSLEERL 701
>07_03_1735 +
29126170-29126227,29126368-29126711,29126790-29126928,
29127028-29127668
Length = 393
Score = 28.3 bits (60), Expect = 8.2
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = -2
Query: 712 NCLRSTACGTALMPIDSKVIVATKLSSSSD 623
NC+ S+ C +A P++SKV ++ ++++D
Sbjct: 3 NCMGSSKCASASAPLESKVTRSSNSTTTTD 32
>04_04_1193 +
31634043-31634349,31634685-31634847,31635048-31636622,
31636653-31637541,31639401-31641266
Length = 1599
Score = 28.3 bits (60), Expect = 8.2
Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 5/138 (3%)
Frame = +3
Query: 111 QRQNEGETMAERTVIKFEPENSKIQGRWQNPGFFQENLGSTGLTQQAVSKHEAMMTYGHK 290
QR+ G + ++IK E +K G P +G T L Q + + + K
Sbjct: 254 QRKMYGRVDEKNSIIKMITE-AKSDGVTVIPIVGIGGIGKTALAQFVYNDPDVKSLFEDK 312
Query: 291 SNKT-KSDAENELTIVKELENMSVKTGDEGS--ESEYSGTLRSGTFKTFQTFASD--WSQ 455
S+ +E + +E+ ++ + EGS S+ L+S T D W
Sbjct: 313 MIWVWLSNNFDEEQLTREMLDVVCQKKQEGSCNFSKLQEILKSHMKPTRYLLVLDDVWDD 372
Query: 456 CSNISFHKLLNRFDSNNA 509
+N +KLL F+SNNA
Sbjct: 373 MNNYRLNKLLAPFNSNNA 390
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,006,920
Number of Sequences: 37544
Number of extensions: 372100
Number of successful extensions: 933
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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