Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_E07
(857 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 255 4e-68
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 252 4e-67
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 6.3
09_06_0103 + 20873310-20873382,20873530-20873735 29 6.3
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334... 28 8.3
08_02_0644 - 19658270-19658626,19659142-19659218,19659256-196594... 28 8.3
04_03_0573 + 17329365-17330440,17330505-17331201 28 8.3
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 28 8.3
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 255 bits (624), Expect = 4e-68
Identities = 120/195 (61%), Positives = 149/195 (76%), Gaps = 1/195 (0%)
Frame = +2
Query: 65 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 244
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 245 KLILAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 424
KL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 425 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 604
EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++W
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFW 180
Query: 605 LLAREVLRLRG-VLP 646
LLAR VL++RG +LP
Sbjct: 181 LLARMVLQMRGTILP 195
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 252 bits (616), Expect = 4e-67
Identities = 117/184 (63%), Positives = 143/184 (77%), Gaps = 1/184 (0%)
Frame = +2
Query: 98 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLILAARAVVA 277
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 278 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 457
IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131
Query: 458 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 637
DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL++RG
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRG 191
Query: 638 -VLP 646
+LP
Sbjct: 192 TILP 195
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 165 TFSAPRWVVAASILVTSSSLRASTSNP 85
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 6.3
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +1
Query: 343 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 450
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>09_04_0594 -
18831011-18831360,18831562-18832111,18832364-18833406,
18833496-18833760,18835194-18835340,18835431-18835511,
18835626-18835804,18835935-18836093,18836269-18836398,
18836935-18837094,18837337-18837419,18837865-18837915,
18838035-18838151,18838273-18838359
Length = 1133
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +2
Query: 17 VHFASQWHYTRLVVTQISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETY 187
V F ++W + + T + G L +ED+ K L+A H E + MET+
Sbjct: 240 VPFIAEWFRNKGHYIKSQVTAATGAIALMQLQEDLKKHLSAECHYTEEELEAYMETH 296
>08_02_0644 -
19658270-19658626,19659142-19659218,19659256-19659430,
19659543-19659596,19659691-19659858,19660756-19660953,
19661546-19661632,19661739-19661827,19662499-19662955
Length = 553
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 603 GCWHVKC*GFVVCFPVTSAGMLWLIGLLP 689
GC ++ C GFV+ TS GM+ G +P
Sbjct: 359 GCMNMLCPGFVLLSRTTSPGMVLTTGSIP 387
>04_03_0573 + 17329365-17330440,17330505-17331201
Length = 590
Score = 28.3 bits (60), Expect = 8.3
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = -3
Query: 411 IWLVKAPGVKRPAIGVAPVCAANFSTAR*PKGRDEMTNTSAGFSMATTARAARISFSQVR 232
+W+V RP G VCAAN ++ +TN FS RAA +++ +
Sbjct: 22 LWIVSHLAGDRPPPGPV-VCAANGTSGC------TLTNIYGSFSDRAICRAANVTYPRTE 74
Query: 231 RKLITWVPSA 202
+L+ V +A
Sbjct: 75 EELVAAVAAA 84
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -2
Query: 706 FTXSGHGRRPINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 578
FT + + NIP LVT TTK + F PPH +G
Sbjct: 458 FTPDVNNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,969,698
Number of Sequences: 37544
Number of extensions: 597345
Number of successful extensions: 1397
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1397
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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