Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_E04
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    28   2.0  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    27   4.5  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    27   4.5  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   6.0  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    26   6.0  

>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/58 (24%), Positives = 31/58 (53%)
 Frame = +3

Query: 183 NKIMSTLKLTSEVRSGLYSHWRDVFEHVRSTAKKKNMMQIRILVVVRHKSVNAAYVSR 356
           +K+  + ++++  R  LY    + FE++    KK   ++I  + V  + ++N  Y+SR
Sbjct: 75  DKLSGSFRVSAIRRQSLYPIILNAFEYLIKEFKKDVFLKISDVFVCVYSNLNILYISR 132


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 359 NNVSVTSMEDLSHEEIVTSYVLAHVAQFDCRLHHMAFTNGNT 484
           +N+SVT+   L +  +V++Y L       CR    AFTNG T
Sbjct: 853 SNISVTNENRLQYIHLVSNYYLNARLSRQCR----AFTNGFT 890


>SPCC1450.11c |cek1||serine/threonine protein kinase
            Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +2

Query: 467  FTNGNTTRNKLLQEIKASANLK*NRSQ*WICHDEWVVPT-----RIVFKPMT 607
            F N   + ++L+  ++ SA +       +IC DE  +PT      ++ KP+T
Sbjct: 1271 FGNDKVSSSRLMYSVRTSATINSRVPFVYICEDETCIPTDLQSDGVLLKPIT 1322


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
 Frame = +2

Query: 275  SKKKKHDADQNTSGGTPQERKCSIRKSCNNVSVTSMEDLSHEE---------IVTSYVLA 427
            +KK+K    Q    G   +   SIRK+C N+ +     L H           +  +Y +A
Sbjct: 1715 NKKQKEYVTQLILSGLLNKNTNSIRKTCMNILLYLRRQLGHHALNPFEANYWVPINYSVA 1774

Query: 428  HVAQFDCRLHHMA 466
                +DC L+  +
Sbjct: 1775 ASTAYDCHLYEQS 1787


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 835 TERTGRPILQVTXTSDGSFFFPRGNLL 755
           T++TG P+L V+ T+DG     +   L
Sbjct: 462 TKKTGYPVLSVSETNDGELLIEQHRFL 488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,436,358
Number of Sequences: 5004
Number of extensions: 67781
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)