Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_E04
         (861 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.6  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    22   6.3  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              22   8.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 170  LLGVQQDNVYPQAYIRSEIRTLLSLA 247
            L+ VQ +N YP+  +  E+R  L  A
Sbjct: 1160 LIIVQAENAYPEVELDRELRPYLRTA 1185


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 117 IHFNTCPTLTSTYNSH*ITQRXQGYSKCTKTSASP 13
           +H+   PTL+ +Y+S+  +    G    T  + SP
Sbjct: 364 LHYRQPPTLSESYSSYVNSMYASGAQFATPCTPSP 398


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 18/75 (24%), Positives = 35/75 (46%)
 Frame = +2

Query: 164 IVLLGVQQDNVYPQAYIRSEIRTLLSLA*RV*TCSKYSKKKKHDADQNTSGGTPQERKCS 343
           +VLL ++ D +  +  I    +T+ +L  +V  CSK +   K   D    G  PQ+ +  
Sbjct: 14  LVLLAIE-DTMSKKMTIEEAKKTIKNLR-KV--CSKKNDTPKELLDGQFRGEFPQDERLM 69

Query: 344 IRKSCNNVSVTSMED 388
               C  ++  +M++
Sbjct: 70  CYMKCIMIATKAMKN 84


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 443 DCRLHHMAFTNGNTTRNK 496
           DC L  + F N +TT N+
Sbjct: 64  DCMLKKVGFVNADTTFNE 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,496
Number of Sequences: 438
Number of extensions: 4402
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)