Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_E03
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    31   0.16 
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    30   0.36 
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    27   3.3  
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    26   5.8  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    26   5.8  

>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = -2

Query: 756 KQPGSKSRPSPSVEGPTSQSERGSST 679
           ++PG  SRP+P V+  TS ++ GSST
Sbjct: 218 RKPGVNSRPAPPVQDVTSSTKYGSST 243


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 13/54 (24%), Positives = 23/54 (42%)
 Frame = -1

Query: 721 SRGPNFAK*ARKFHRPSSSRPEVPKTGHPDPDADASDHEVGTQRRRSSRPVKQQ 560
           S+ P      R    PS + P  P T  P+P   + + + G+     S P+ ++
Sbjct: 96  SKRPKAVDRRRSITAPSKTEPSTPSTEKPEPSTPSGESDHGSNAGNESLPLLEE 149


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 474 PPQFLTNLIRFGGGSCH*PW*RVEPPETPHNEVRDG 367
           PP F+T++ + G  S H     V      HNEV DG
Sbjct: 237 PPNFVTSINKAGSSSDHGGELHVTYCPVDHNEVSDG 272


>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
 Frame = +2

Query: 395 SGGSTRHHGQWQEP----PPNLIRFVRNCGGPGNSSAGSAVVTRIRRLGLEVALDKTQAL 562
           S   +R  GQ  EP    PP  I+   +  G GN SA    ++        VAL+ T  +
Sbjct: 68  SEAKSREFGQRSEPSPPPPPEGIKIKISTKGAGNPSAKKLKISTEETSDTNVALNNTSEI 127

Query: 563 LFHGPGRAPPLGA 601
                  + P  A
Sbjct: 128 SHKSSNNSQPKDA 140


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -1

Query: 733 AVAISRGPNFAK*ARKFHRPSSSRPEVPKTGHP--DPDADASDH 608
           ++A  +  + AK AR F   +SS P +PK+ HP       AS H
Sbjct: 76  SLASVKSSSLAKKARPF--TASSNPRMPKSAHPISSRSVSASSH 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,433,453
Number of Sequences: 5004
Number of extensions: 71210
Number of successful extensions: 225
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)