Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_E01
(896 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 34 0.18
07_03_1747 + 29188568-29188715,29188793-29189541 31 1.6
12_01_0524 - 4167867-4168445 29 3.8
07_03_1400 + 26287124-26287298,26287925-26288007,26288141-262882... 29 3.8
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 29 6.6
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 28 8.8
04_01_0530 - 6928528-6929500,6929514-6930964 28 8.8
01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892 28 8.8
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 28 8.8
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 33.9 bits (74), Expect = 0.18
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 332 HQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 168
H P AAA P VP++ P L + S GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +1
Query: 385 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 537
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>12_01_0524 - 4167867-4168445
Length = 192
Score = 29.5 bits (63), Expect = 3.8
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -1
Query: 329 QPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 150
QPS+AA P + + + + YSH G + S + G + G GGG P V
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160
Query: 149 CEERVDHEGQ*C 114
EE + E + C
Sbjct: 161 VEEVEEEEEKEC 172
>07_03_1400 +
26287124-26287298,26287925-26288007,26288141-26288270,
26288369-26288442,26288797-26288883,26288976-26289100,
26289232-26289292,26289606-26289683,26289785-26289890,
26289978-26290123,26290264-26290380
Length = 393
Score = 29.5 bits (63), Expect = 3.8
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +3
Query: 471 ISMQLDNWPNDMQTCTFKFGSRMHNSDEMDS 563
++++ W ND+++C F+ SR +S+ M+S
Sbjct: 83 VNLEGGGWCNDVKSCVFRKSSRRGSSNHMES 113
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 230 VRVHRANTGRSSNELDRQTTELERRGVGLQHLAGVLGTL 346
V+ H R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +2
Query: 236 VHRANTGRSSNELDRQTTELERRGVG 313
V+ A +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 65 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 205
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
>01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892
Length = 291
Score = 28.3 bits (60), Expect = 8.8
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +3
Query: 315 CSTWLVSSERLWRSDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDN 491
CS++L R+W + +++ + LRA +N S + +D+STP + LDN
Sbjct: 137 CSSFLA---RIWNNTTPIVDTGLSPGYAALLRALCPSNASATATTAIDVSTPAT--LDN 190
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 411 RGERSPRRWLQPRLAVPRQTSTSVPRTPAKCCSPTPLRSNS 289
R RSPRR P R + + R+PA S +P+R++S
Sbjct: 224 RDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADS 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,675,437
Number of Sequences: 37544
Number of extensions: 534594
Number of successful extensions: 1590
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1588
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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