Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_D22
(837 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047... 36 4e-05
03_03_0009 - 13691820-13691900,13693576-13693719 44 1e-04
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 44 2e-04
05_03_0389 - 13409848-13409964,13410049-13410114,13410209-134103... 30 2.0
05_01_0351 + 2750253-2751042,2751951-2751958,2752122-2752149,275... 29 3.5
05_07_0073 - 27504169-27504882,27504989-27505161,27505302-275054... 29 4.6
04_03_0108 - 11340504-11340680,11341580-11341665,11341784-113418... 29 6.1
01_07_0246 + 42253379-42253642,42253846-42254084,42254267-422544... 29 6.1
>07_03_1530 +
27502546-27502671,27503487-27503561,27504670-27504746,
27505576-27507522,27508478-27508946,27509898-27510079,
27510746-27511208,27511295-27511691,27511810-27511937,
27512106-27512273,27512452-27512559,27512830-27512838
Length = 1382
Score = 35.9 bits (79), Expect(2) = 4e-05
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +1
Query: 112 EYKSGDFIFAKVKGYPAWPA 171
++K GD + AK+KG+PAWPA
Sbjct: 22 QWKVGDLVLAKMKGFPAWPA 41
Score = 29.1 bits (62), Expect(2) = 4e-05
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +1
Query: 193 KKYFVYFYGTGEIANLPPNMIFDYAENKDKFL--TKTVKRRDFNDGVKQI 336
KK VYFYGT +IA + + E K K L + K DF VK+I
Sbjct: 81 KKLLVYFYGTKQIAFCNYTDLEAFTEEKRKSLLAKRHGKGADFVRAVKEI 130
>03_03_0009 - 13691820-13691900,13693576-13693719
Length = 74
Score = 44.4 bits (100), Expect = 1e-04
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 7/47 (14%)
Frame = +1
Query: 112 EYKSGDFIFAKVKGYPAWPARV-------QRLNGKKYFVYFYGTGEI 231
++K GD + AK+KG+PAWPA + Q KK VYFYGT ++
Sbjct: 28 QWKVGDLVLAKMKGFPAWPAMISEPEQWGQTSVKKKILVYFYGTKQM 74
>08_01_0003 +
30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 43.6 bits (98), Expect = 2e-04
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Frame = +1
Query: 91 KMGKKVREYKSGDFIFAKVKGYPAWPARVQRLNG-------KKYFVYFYGTGEI 231
K K + + GD + AKVKGYP WPA+V + +K FV F+GT EI
Sbjct: 10 KAHKWTTQPQLGDLVLAKVKGYPPWPAKVSKPEDWDQMPVPRKVFVVFFGTREI 63
>05_03_0389 -
13409848-13409964,13410049-13410114,13410209-13410325,
13410822-13410893,13410979-13411258,13411528-13411730,
13412230-13412316,13412705-13412758,13413042-13413221,
13414402-13414576,13414628-13414918,13414923-13415344
Length = 687
Score = 30.3 bits (65), Expect = 2.0
Identities = 25/68 (36%), Positives = 34/68 (50%)
Frame = +1
Query: 64 HGGSGIVILKMGKKVREYKSGDFIFAKVKGYPAWPARVQRLNGKKYFVYFYGTGEIANLP 243
+GG+ L + K R + +++FA + GY PA VQ G Y YF G G IA
Sbjct: 551 NGGAYPPDLSLITKAR-HNGQNYVFALLTGYRDPPAGVQIREGLHYNPYFPG-GAIA--M 606
Query: 244 PNMIFDYA 267
P M+ D A
Sbjct: 607 PKMLIDGA 614
>05_01_0351 +
2750253-2751042,2751951-2751958,2752122-2752149,
2754692-2754775,2755780-2757548
Length = 892
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +1
Query: 70 GSGIVILKMGKKV--REYKSGDFIFAKVKGYPAWPARV 177
GSG ++ G R + GD ++ KVK +P WP V
Sbjct: 27 GSGAIVHPGGGGAWPRGVRFGDMVWGKVKSHPWWPGHV 64
>05_07_0073 -
27504169-27504882,27504989-27505161,27505302-27505485,
27505604-27505675,27506173-27506733,27506846-27507145
Length = 667
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -2
Query: 167 GHAGYPLTLANIKSPDLYSLTFLPIFSITMPLPPCSMLS-LHNTYSRQRSDGKEI 6
GH+ + T++ SPD+ S+ F+PI S+ + C L+ N Y R + +E+
Sbjct: 328 GHSNWLSTISG--SPDVISMAFVPITSLLTGVRGCGFLNHAVNLYLRYKPPIEEL 380
>04_03_0108 -
11340504-11340680,11341580-11341665,11341784-11341827,
11342339-11342428,11343762-11343928,11343986-11344010,
11344636-11344797,11345376-11345422,11345926-11345985,
11346094-11346465
Length = 409
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -2
Query: 713 ALPLSYHPDHLLLIHPFXPYLEVSLAL 633
A+PLS+HP HL P P LE++L L
Sbjct: 53 AVPLSHHPHHL----PLLPTLELALTL 75
>01_07_0246 +
42253379-42253642,42253846-42254084,42254267-42254471,
42254719-42254787,42254869-42255055,42255760-42255926,
42256350-42257045
Length = 608
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -2
Query: 125 PDLYSLTFLPIFSITMPLPPCSMLS-LHNTYSRQRSDGKEI 6
PD+ S++F+PI S+ +P C L+ N Y R + +E+
Sbjct: 289 PDVISMSFIPITSLLNGVPGCGFLNHAINLYLRYKPRVEEL 329
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,037,784
Number of Sequences: 37544
Number of extensions: 342884
Number of successful extensions: 918
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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