Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_D14
         (874 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0373 + 2783596-2784933                                           31   0.91 
06_03_1310 + 29238644-29240260                                         31   1.2  
02_05_0084 - 25690346-25691206                                         30   2.8  
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143...    29   3.7  
01_01_0046 - 331758-332627                                             29   3.7  
02_01_0744 + 5548306-5549445                                           29   4.9  
06_01_0079 - 633595-633985,634346-634543,634864-635036,635355-63...    29   6.4  
04_01_0041 - 464695-464850,467485-469029                               29   6.4  
01_05_0227 - 19512866-19514983                                         29   6.4  
08_02_0530 + 18244933-18245217,18245309-18245383,18246176-182462...    28   8.5  
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595...    28   8.5  

>07_01_0373 + 2783596-2784933
          Length = 445

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = -3

Query: 92  EEEKALTKEGMAEAAETXKGTISSMNRS 9
           E+++ LTK G +  +ET KG++ S++RS
Sbjct: 151 EQQQQLTKSGCSSTSETSKGSVLSLSRS 178


>06_03_1310 + 29238644-29240260
          Length = 538

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +3

Query: 513 SRPYASSHPPLAISGYINPIIKSPNSIHQPPQT*HPFPSIP*TP 644
           S P +SS PP    GY+ P +  P     PP    P P  P +P
Sbjct: 437 SPPSSSSSPPTEHPGYVLPPLTPPPPTTTPPGHHAPVPGTPSSP 480


>02_05_0084 - 25690346-25691206
          Length = 286

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
 Frame = +1

Query: 427 DLCWTTADVTVEGVNVL-ATPSSSRITIGGLALMHQATLPWRSR----ATSTRSSNPRIP 591
           D+ +      V GV +  +T +++   +GG+AL   A LPW SR    AT+  S+    P
Sbjct: 194 DVVYPPPPAAVGGVGMFHSTTTTTGGMLGGMAL---AVLPWVSRGQSPATAAASAYYTSP 250

Query: 592 YTNHPRLNIHFHQSPER 642
           Y   PRL    H   ER
Sbjct: 251 YHMSPRLR-RQHMEVER 266


>02_01_0219 -
           1437685-1437723,1437932-1438091,1438385-1438514,
           1438627-1438696,1439264-1439407,1439771-1439837,
           1439970-1440019,1440386-1440559,1440881-1440934,
           1441008-1441112
          Length = 330

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
 Frame = +1

Query: 283 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWTTADVT 456
           TE  +N V V  L   SS   GY D  + ++   V      +  K+ V +D    TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224

Query: 457 VEGVNVLATPSSSRITIGGLALMHQ 531
           +  +N+L  P        G  L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249


>01_01_0046 - 331758-332627
          Length = 289

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 24/81 (29%), Positives = 30/81 (37%)
 Frame = +3

Query: 504 YWRSRPYASSHPPLAISGYINPIIKSPNSIHQPPQT*HPFPSIP*TPY*KGVRAGVKASG 683
           YW S P     PP        P   S      PP + HP P+IP        RA      
Sbjct: 17  YWTSPPPPPPPPP-------PPPSSSRYRPPSPPSSRHPHPTIP------AARAAPPLGP 63

Query: 684 CHQXLHQRISPPRHWAGKGSP 746
            ++ LHQ+  PP    G+  P
Sbjct: 64  TNRRLHQQPPPPASRDGRHEP 84


>02_01_0744 + 5548306-5549445
          Length = 379

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = +1

Query: 496 RITIGGLALMHQATLPWRSRATST---RSSNPRIPYTNHPRLNIHFHQSPERRTKKEFAP 666
           RIT+ G+ L+H  +L W+ R   T     S  ++ +  H  +   F   P  +    F P
Sbjct: 286 RITVDGVVLVHVRSLQWKFRGNETVIVDQSPVQVLWDVHDWI---FAGGPAAQAVFVFKP 342

Query: 667 GLKPP 681
           G  PP
Sbjct: 343 GAPPP 347


>06_01_0079 -
           633595-633985,634346-634543,634864-635036,635355-635599,
           635683-635860,636291-636473,636769-636873,637709-637846,
           637933-638925
          Length = 867

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 753 EIGANPYQPSDEGVRYADGASDDN 682
           E+ +N Y+PS++ + YA+G +  N
Sbjct: 617 EVSSNEYEPSEKDIIYAEGVTQGN 640


>04_01_0041 - 464695-464850,467485-469029
          Length = 566

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 244 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 420
           +I   R + D++ T  +SN + V +LP VSS  + Y D ++   +    P   P  ++ V
Sbjct: 40  LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99

Query: 421 TVD 429
            +D
Sbjct: 100 PLD 102


>01_05_0227 - 19512866-19514983
          Length = 705

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 461 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 369
           S +T + +QQ   +  ++ LG  GKTT ++L
Sbjct: 18  SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48


>08_02_0530 +
           18244933-18245217,18245309-18245383,18246176-18246292,
           18246503-18246631,18246726-18246785,18247271-18247441,
           18247596-18247689,18247860-18247951,18248071-18248220,
           18248407-18248465,18249735-18249864
          Length = 453

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 652 KEFAPGLKPPVVIRXSISVSHPLVTGLVRVRPY 750
           KEF PG+KPP + +  + V  PL +     + Y
Sbjct: 282 KEFRPGVKPPGMWKTLLGVVSPLASSTQNAQNY 314


>02_05_0788 +
           31758119-31758384,31758482-31758634,31759385-31759509,
           31759650-31759678,31760943-31761008,31761059-31761125,
           31761226-31761370,31761404-31761451,31762014-31762182,
           31762645-31762779,31762858-31763064,31763608-31763735,
           31763815-31763866,31764046-31764060,31764502-31764609
          Length = 570

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 21/86 (24%), Positives = 36/86 (41%)
 Frame = +1

Query: 235 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
           Q   I  +  ++ L       N  TV  + N    + GY+    +N+   +    PSLK 
Sbjct: 198 QVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK- 256

Query: 415 PVTVDLCWTTADVTVEGVNVLATPSS 492
               D C  T ++ +EG++ L   S+
Sbjct: 257 ----DFCEPTVEM-LEGMSALKALST 277


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.130    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,147,915
Number of Sequences: 37544
Number of extensions: 505228
Number of successful extensions: 1350
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1350
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)