Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_D13
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    75   1e-14
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    75   2e-14

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 39/95 (41%), Positives = 43/95 (45%)
 Frame = +3

Query: 138 DPXXPVXXTXXIGYKXGXTQXVXXPXRPGXEXNSXXIXXAVXIXXTPPXVXVGXVXYXXT 317
           D   PV  T  +GYK G T  V    RPG + +   I  AV I  TPP V VG V Y  T
Sbjct: 36  DASKPVHLTAFLGYKAGMTHIVRDLDRPGSKMHKREILEAVTIIETPPMVVVGVVGYVET 95

Query: 318 PXXLHXXXXVWAEHMSXHCXXHFYXXWXGCNXXAF 422
           P  L     VWAEH+S      FY  W      AF
Sbjct: 96  PRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAF 130



 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 35/87 (40%), Positives = 47/87 (54%)
 Frame = +1

Query: 496 RXCTVVXVXAHTPXKLXXQRRXKAQLMXXQLNCGXXXDKMKWAXXHLXXXIPXXSVFAQH 675
           + C+VV V AHT  +     + KA LM  Q+N G   DK++WA  H    +   S F Q+
Sbjct: 153 KYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQN 212

Query: 676 EMXDCIGVXSGKGYDXVVSRWXXXKLP 756
           EM D IGV  GKG +   +RW   +LP
Sbjct: 213 EMIDVIGVTRGKGNEGTTARWGTKRLP 239


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 74.5 bits (175), Expect = 2e-14
 Identities = 38/95 (40%), Positives = 43/95 (45%)
 Frame = +3

Query: 138 DPXXPVXXTXXIGYKXGXTQXVXXPXRPGXEXNSXXIXXAVXIXXTPPXVXVGXVXYXXT 317
           D   PV  T  +GYK G T  V    RPG + +   I  AV +  TPP V VG V Y  T
Sbjct: 36  DASKPVHLTAFLGYKAGMTHIVRDLDRPGSKMHKREILEAVTVIETPPMVVVGVVGYVET 95

Query: 318 PXXLHXXXXVWAEHMSXHCXXHFYXXWXGCNXXAF 422
           P  L     VWAEH+S      FY  W      AF
Sbjct: 96  PRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAF 130



 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 35/87 (40%), Positives = 47/87 (54%)
 Frame = +1

Query: 496 RXCTVVXVXAHTPXKLXXQRRXKAQLMXXQLNCGXXXDKMKWAXXHLXXXIPXXSVFAQH 675
           + C+VV V AHT  +     + KA LM  Q+N G   DK++WA  H    +   S F Q+
Sbjct: 153 KYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQN 212

Query: 676 EMXDCIGVXSGKGYDXVVSRWXXXKLP 756
           EM D IGV  GKG +   +RW   +LP
Sbjct: 213 EMIDVIGVTRGKGNEGTTARWGTKRLP 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,230,322
Number of Sequences: 5004
Number of extensions: 8598
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)