Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_D12
         (868 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical p...    28   7.5  
U41542-2|AAR30212.1|  623|Caenorhabditis elegans Suppressor of p...    28   7.5  
U41542-1|AAR30211.1|  684|Caenorhabditis elegans Suppressor of p...    28   7.5  
AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical ...    28   7.5  
AF016684-15|AAB66214.1|  543|Caenorhabditis elegans Hypothetical...    28   7.5  

>Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical
           protein F26D2.10 protein.
          Length = 1213

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
 Frame = +3

Query: 108 NGGSNYDSLNTVPIYYLAKPQPRERAW------ENQRGKKTLFE 221
           NG + Y +L    +YY  KP   ER W      +NQ GK TL +
Sbjct: 841 NGRAKYTNLY---LYYFGKPLDYERRWRYSLFLDNQDGKNTLLD 881


>U41542-2|AAR30212.1|  623|Caenorhabditis elegans Suppressor of
           presenilin defectprotein 3, isoform b protein.
          Length = 623

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
 Frame = -2

Query: 729 KKQRRYERWLPQASIPVVTFXA------PLAKTLYTKGSIXRAFAVXMRTEHXDQASFCP 568
           K +R YE+     ++P+  F        PLAK  Y K ++   F   M  E   + + CP
Sbjct: 476 KAKREYEKNHCFPNLPIFEFNIEYKNLHPLAKAQYGKNNMKEYFLNEMEVEKSRECTDCP 535

Query: 567 F 565
           F
Sbjct: 536 F 536


>U41542-1|AAR30211.1|  684|Caenorhabditis elegans Suppressor of
           presenilin defectprotein 3, isoform a protein.
          Length = 684

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
 Frame = -2

Query: 729 KKQRRYERWLPQASIPVVTFXA------PLAKTLYTKGSIXRAFAVXMRTEHXDQASFCP 568
           K +R YE+     ++P+  F        PLAK  Y K ++   F   M  E   + + CP
Sbjct: 537 KAKREYEKNHCFPNLPIFEFNIEYKNLHPLAKAQYGKNNMKEYFLNEMEVEKSRECTDCP 596

Query: 567 F 565
           F
Sbjct: 597 F 597


>AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical
           protein ZC190.4 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = -3

Query: 395 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCY 261
           +GT+ +   DIID   +P N +S++ +  +++  R  ET++H+ +
Sbjct: 287 VGTR-KTSTDIIDGFNVPSNMISDDNLPALIY--RVIETLNHMIF 328


>AF016684-15|AAB66214.1|  543|Caenorhabditis elegans Hypothetical
           protein F45C12.15 protein.
          Length = 543

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +2

Query: 407 VTWRKRSSPFKTPA*SGSRTLPGGEFDWGGTPVKE*RRCPKASSARTETS 556
           +T RKR++  +TP  S S +    +  +   PV+  RR  K +++R  TS
Sbjct: 27  LTTRKRTAQQQTPVDSSSSSSDASDESFVACPVEAKRRKKKLTNSRKSTS 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,912,274
Number of Sequences: 27780
Number of extensions: 389079
Number of successful extensions: 1027
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)