Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_D09
         (875 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0227 - 19512866-19514983                                         32   0.69 
07_01_0373 + 2783596-2784933                                           31   0.92 
02_05_0879 - 32444967-32445250,32445643-32445674,32445752-324458...    29   3.7  
09_04_0506 - 18188785-18190599                                         29   4.9  
01_01_0330 - 2681019-2683988                                           29   4.9  
04_01_0041 - 464695-464850,467485-469029                               29   6.5  
12_02_0985 + 25052753-25053691                                         28   8.5  
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143...    28   8.5  

>01_05_0227 - 19512866-19514983
          Length = 705

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 461 STVTSAVVQQRSTVTGILGLGAEGKTTASRL 369
           S +T + +QQ   +  ++GLG  GKTT ++L
Sbjct: 18  SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48


>07_01_0373 + 2783596-2784933
          Length = 445

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = -1

Query: 92  EEEKALTKEGMAEAAETXKGTISSMNRS 9
           E+++ LTK G +  +ET KG++ S++RS
Sbjct: 151 EQQQQLTKSGCSSTSETSKGSVLSLSRS 178


>02_05_0879 -
           32444967-32445250,32445643-32445674,32445752-32445809,
           32445840-32445913,32446004-32446088,32447054-32447735
          Length = 404

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 543 LRSRLHQPDHQIPEF-HTPTTPDLTSISINPLNAVLXGVRAGGLKPPLSSXAPS 701
           L+SR   P HQ PE    PTT +  S  + PL+A       G + PP +S +PS
Sbjct: 305 LQSRCPGP-HQFPELTEPPTTVNHDSTFLPPLSAPGPAEAGGAIPPP-NSGSPS 356


>09_04_0506 - 18188785-18190599
          Length = 604

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 565 PIIKSPNSIHQPPQT*HPFPSIP*TPYXKEFAPG 666
           P+   PN +H PPQ   P  + P  P   +  PG
Sbjct: 120 PVPDRPNPVHLPPQPQPPVAAAPPPPPHNQIQPG 153


>01_01_0330 - 2681019-2683988
          Length = 989

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -1

Query: 455 VTSAVVQQRSTVTGILGLGAEGKTTASR 372
           V+S   + RSTV GI G+G  GKTT ++
Sbjct: 181 VSSNYNESRSTVFGIQGMGGIGKTTLAQ 208


>04_01_0041 - 464695-464850,467485-469029
          Length = 566

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 244 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSP-KIPV 420
           +I   R + D++ T  +SN + V +LP VSS  + Y D ++   +    P    P ++ V
Sbjct: 40  LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99

Query: 421 TVD 429
            +D
Sbjct: 100 PLD 102


>12_02_0985 + 25052753-25053691
          Length = 312

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = -1

Query: 524 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILGLGAEGKTTASRLTRYASR*P 345
           + +R  + +R D    S+ + +T  S   +  S +      GAEG TTAS LT   S  P
Sbjct: 127 VSSRTGLFLRGDCHRNSSASNATNCSIPAETMSRMVPTASCGAEGNTTASALTCVTSTSP 186


>02_01_0219 -
           1437685-1437723,1437932-1438091,1438385-1438514,
           1438627-1438696,1439264-1439407,1439771-1439837,
           1439970-1440019,1440386-1440559,1440881-1440934,
           1441008-1441112
          Length = 330

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 409 KIPVTVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQ 531
           K+ V +D    TAD+++  +N+L  P        G  L+HQ
Sbjct: 209 KVAVMMDDMIDTADISLPNINILMKPIKLGTIAKGAELLHQ 249


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,628,269
Number of Sequences: 37544
Number of extensions: 534510
Number of successful extensions: 1962
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1954
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)