Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_D06
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    29   0.65 
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    26   8.0  

>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 618 NSNGESAEPCGLRQSDDGDENEFPLLDIET 529
           NSNGE++ P  +      DE  + L+DIET
Sbjct: 333 NSNGEASLPSDVNHGVKEDEGSWQLIDIET 362


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +1

Query: 82  WLPS*MLL*RTASFRRYGKKQTLSVYTSRANRIMKPLVTDRLVSSQR 222
           W+P      + ++ RRY +K   +V   R  ++ K L  ++ + +QR
Sbjct: 449 WVPKAKARGKNSALRRYLRKHARNVVDQRRLKVEKSLEIEKKMRAQR 495


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,371,497
Number of Sequences: 5004
Number of extensions: 69568
Number of successful extensions: 175
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)