Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_D06
(871 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 47 2e-05
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 42 5e-04
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 34 0.13
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 30 2.8
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 30 2.8
04_04_0706 + 27419215-27419371,27419521-27419734,27419818-274199... 29 3.7
03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484 29 6.4
04_03_0573 + 17329365-17330440,17330505-17331201 28 8.5
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 46.8 bits (106), Expect = 2e-05
Identities = 45/141 (31%), Positives = 61/141 (43%)
Frame = +3
Query: 141 ADVIGIHKPGKPNNETASYRPISLLPAIGKIYERLLRKRLWDFVTANKILIDEQFGFRAK 320
A ++ I KPGK N YRPISL KI ++L RL V I +D Q GF K
Sbjct: 971 AYIVLIQKPGKENT-VDGYRPISLQNCSVKILSKVLATRL-QRVFLRMIHLD-QTGF-LK 1026
Query: 321 HSCVQQVHRLTEHILIGLNRRKQIPTGALFFDVAKAFDKVWHNGLIYKLYNMGVPDRLVL 500
C+ + ++ RRK T + D KAFD V + L L G P+ +
Sbjct: 1027 GRCISENLIYATELIQACYRRK-CQTIIVKLDFTKAFDSVIWSSLFKILAVRGFPENWIS 1085
Query: 501 IIRDFLSNRSFRYRVEGTRSR 563
I+ LS+ + G R
Sbjct: 1086 WIKGLLSSSKSAVLLNGVPGR 1106
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 42.3 bits (95), Expect = 5e-04
Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 2/145 (1%)
Frame = +3
Query: 165 PGKPNNETAS-YRPISLLPAIGKIYERLLRKRLWDFVTANKILIDEQFGFRAKHSCVQQV 341
P K + ET + +RPISL+ KI +LL RL + K++ D +GF K +Q
Sbjct: 377 PKKTSLETVNDFRPISLMGISLKIVTKLLAGRLQGVIL--KLVSDNHYGF-IKGKTIQDC 433
Query: 342 HRLT-EHILIGLNRRKQIPTGALFFDVAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFL 518
E+I +++I L D KAFD + H+ ++ + +MG P + + ++
Sbjct: 434 PAWPFEYIHQCQQSKREIVL--LKLDFEKAFDTIEHSAILSVMQHMGFPLKWIEWVQMVF 491
Query: 519 SNRSFRYRVEGTRSRPRHLTAGVRK 593
S S + G GVR+
Sbjct: 492 STASSAVLLNGVPGNSFKCRRGVRQ 516
>02_02_0078 +
6587491-6588021,6588160-6589151,6592430-6592607,
6592635-6592794,6592992-6593158,6593246-6593869
Length = 883
Score = 34.3 bits (75), Expect = 0.13
Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 1/147 (0%)
Frame = +3
Query: 189 ASYRPISLLPAIGKIYERLLRKRLWDFVTANKILIDEQFGFRAKHSCVQQVHRLTEHILI 368
+ +RPISL + KI ++L RL F+ I+ + Q F E +
Sbjct: 185 SKFRPISLCNVLYKIASKVLANRLKLFLP--DIVSEFQSAFVPGRLITDSSLVAYECLNT 242
Query: 369 GLNRRKQIPTGALFFDVAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVE 548
+ + P AL D+ KA+D++ + L L +G + + +++ + R+
Sbjct: 243 IKKQSNKKPFFALKIDMMKAYDRIEWSYLHGCLMRLGFEQDWINTVMRCVTSTRYAIRIN 302
Query: 549 GTRSRPRHLTAGVRKA-PHSPRYYLVC 626
G + + G+R+ P SP +L+C
Sbjct: 303 GELTDTVVPSRGIRQGDPISPYLFLLC 329
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 29.9 bits (64), Expect = 2.8
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 1/110 (0%)
Frame = +3
Query: 297 EQFGFRAKHSCVQQVHRLTEHILIGLNRRKQIPTGALFFDVAKAFDKVWHNGLIYKLYNM 476
+Q GF K C+ + ++ + RK T + D AKAFD V L L
Sbjct: 5 DQTGF-LKGRCISENLIYATELIQACHARK-CQTLIIKLDFAKAFDSVNWQSLFQILSVK 62
Query: 477 GVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRHLTAGVRKA-PHSPRYYLV 623
G PD + I++ L + G + G+R+ P SP +++
Sbjct: 63 GFPDNWISWIKNLLQTSKSAVLLHGIPGKWITCKKGLRQGDPLSPYLFIL 112
>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 29.9 bits (64), Expect = 2.8
Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 1/171 (0%)
Frame = +3
Query: 12 KAPGSDGIRNRALKLLPVQLITMLATILNAAMTHCIFPAVWKEADVIGIHKPGKPNNETA 191
K+PG DG R + L + + + + P + ++ I K +P +
Sbjct: 907 KSPGPDGFPARFYQRNWGTLKSDIILAVRNFFQSGLMPEGVNDTAIVLIPKKDQPI-DLK 965
Query: 192 SYRPISLLPAIGKIYERLLRKRLWDFVTANKILIDEQFGFRAKHSCVQQVHRLTEHI-LI 368
YRPISL + K+ + L RL + + ++ EQ F E I
Sbjct: 966 DYRPISLCNVVYKVVSKCLVNRLRPIL--DDLVSKEQSAFIQGRMITDNALLAFECFHSI 1023
Query: 369 GLNRRKQIPTGALFFDVAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLS 521
N++ A D++KA+D+V L L +G R + ++ L+
Sbjct: 1024 QKNKKANSAACAYKLDLSKAYDRVDWRFLELALNKLGFAHRWEKVAQNSLT 1074
>04_04_0706 +
27419215-27419371,27419521-27419734,27419818-27419913,
27420006-27420123,27420211-27420384,27420633-27420803,
27420932-27420987,27421125-27421214,27421296-27421444,
27421640-27421722,27421830-27421958,27422063-27422137,
27422248-27422416,27422965-27423104,27423191-27423298,
27423603-27423783,27424445-27424542,27424639-27424728,
27424881-27425034,27425376-27425431,27425483-27425533,
27425651-27425732,27425821-27425995,27426748-27426823,
27426951-27427121,27427198-27427269,27427350-27427454,
27427948-27428037,27428703-27428908,27428989-27429190,
27429294-27429473,27429858-27429925,27430005-27430341,
27430428-27430637,27430765-27431448,27431537-27431940,
27432495-27432542,27432777-27433023,27433381-27433602,
27433796-27434026
Length = 2122
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 524 VRQEVSYDEHESVWHSHVVQFVDQTVVPDFVERLRY 417
V V Y + HSH+++ V+ + FVER+ Y
Sbjct: 352 VESLVGYSSSDDSCHSHLIEIVETLNIEKFVERIVY 387
>03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484
Length = 663
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +3
Query: 414 DVAKAFDKVWHNGLIYKLYNMG-VPDRLVL 500
DVA+AF+ V H G + +YN+G V +R V+
Sbjct: 230 DVAEAFEVVLHKGEVGHVYNIGTVKERRVI 259
>04_03_0573 + 17329365-17330440,17330505-17331201
Length = 590
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 126 AVWKEADVIGIHKPGKPNNETASYRPISLLPAI-GKIYERLLRKR 257
AV++E D + + PG ++ ++RP LP + ++ E L +R
Sbjct: 281 AVYREDDRVDVATPGDGRSDYPAFRPTPTLPLVASRLAEEWLEER 325
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,814,730
Number of Sequences: 37544
Number of extensions: 507857
Number of successful extensions: 1346
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1344
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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