Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_D06
         (871 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    26   0.39 
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    24   1.6  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    24   1.6  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   4.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   4.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   4.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.4  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 26.2 bits (55), Expect = 0.39
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 423  KAFDKVWHNGLIYKLYNMGVPDRLVLIIRD 512
            KA+ KV  N +I+++Y MG  DR + +  D
Sbjct: 1542 KAYQKVEENEIIFEIYKMG--DRFIGLTSD 1569


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 118 MQCVIAAFKMVANIVISWTGKSFNARLRMPSE 23
           M+C++ A K + N VI W     NAR+ +  E
Sbjct: 72  MKCIMIATKAMKNDVILWDFFVKNARMILLEE 103


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 118 MQCVIAAFKMVANIVISWTGKSFNARLRMPSE 23
           M+C++ A K + N VI W     NAR+ +  E
Sbjct: 46  MKCIMIATKAMKNDVILWDFFVKNARMILLEE 77


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +1

Query: 622 FVYQRYTPGLGRPSSALRR*PXIYYSC 702
           ++Y  YT  + RP +   + P +Y  C
Sbjct: 140 YIYSLYTAVITRPDTKFIQLPPLYEMC 166


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +1

Query: 622 FVYQRYTPGLGRPSSALRR*PXIYYSC 702
           ++Y  YT  + RP +   + P +Y  C
Sbjct: 140 YIYSLYTAVITRPDTKFIQLPPLYEMC 166


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 621 LNSNGESAEPCGLRQSDDGDENE 553
           +N+NGE+         DDGD+++
Sbjct: 379 MNANGEAVGEVDEDDDDDGDDDD 401


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 10/40 (25%)
 Frame = +2

Query: 287 SNRRAVWIPRQTLVRTTS----------APPHGAHLNRAK 376
           SN   + IPR +LV TTS           PP+G  L  A+
Sbjct: 732 SNNSQLQIPRASLVSTTSVKSLRLEGDETPPYGMELTEAE 771


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,239
Number of Sequences: 438
Number of extensions: 5180
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)