Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_D05
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    89   1e-18
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    28   1.9  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    27   2.5  
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    27   3.3  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    27   4.4  
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    26   7.6  
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    26   7.6  

>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 88.6 bits (210), Expect = 1e-18
 Identities = 45/117 (38%), Positives = 67/117 (57%), Gaps = 3/117 (2%)
 Frame = +3

Query: 63  CEKRFMDPDELYRHLRKEHLYCHLCD-ADGK--NFYYASHSALAQHFRKDHYLCEEGECA 233
           C   F D DEL++H R++H  C++CD   G+  + Y+ ++ +L +HF KDHY+C E EC 
Sbjct: 250 CNTHFYDDDELFKHCREKHERCYICDQVAGRPTHQYFKNYDSLERHFEKDHYICRERECL 309

Query: 234 GQHLAAVFRSEIDLKAHIATTHGRGMPRGAARQARTLELQFNITPHPVVTQRTPRDR 404
            +    VF +EIDLKAH    H     +   R+AR +  QF+  P P  + R  R+R
Sbjct: 310 -ERKFVVFGTEIDLKAHQLDEHPHNFTQRELREARRIIPQFSYDP-PGASGRNRRER 364


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
 Frame = -1

Query: 228 TRPLHISSDPCGNVEQVRSVKHNRNSFHRH----HTNDSTSAPCASDGTTHQDP*IVSHK 61
           TR LH  ++  G  E+   +    N+  R+    H ++   A C S    + DP  V HK
Sbjct: 605 TRSLHFVAEFLGETEEAEKLAGYENAMLRNLEDNHWDEEVQAYCDSSVDEYDDPINVCHK 664


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 60  SCEKRFMDPDELYRHLR 110
           SC+KRF   DEL RH+R
Sbjct: 38  SCKKRFTRRDELIRHVR 54


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 246 LNVVRHTRPLHISSDPCGNVEQVRSVKHNRNSFH 145
           L++VRHT PL+ +S    + +++ S  + R S H
Sbjct: 258 LDLVRHTPPLNYTSSVDSSPQRMASDSYGRPSLH 291


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = +3

Query: 54   VNSCEKRFMDPDELYRHLRKEHL 122
            V++C+K F + +++++HL+  HL
Sbjct: 1066 VSNCKKCFSNYEDMFKHLQHSHL 1088


>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
 Frame = +3

Query: 27  YLTQGAI--HFVNSCEKRFMDPDELYRHLRKEHLYCHLCDADGKNFYYASH 173
           Y+   AI  H V      F   +E    L K  L+ H  +A    F +ASH
Sbjct: 61  YIESAAILEHLVRKYGPSFKPSEEDVAELEKYELWMHFSEASLMPFIWASH 111


>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 54  VNSCEKRFMDPDELYRHLRKEH 119
           V +C K F+ P+ + +H+ K+H
Sbjct: 478 VGTCAKLFLGPEFVRKHINKKH 499


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,905,643
Number of Sequences: 5004
Number of extensions: 53685
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)