Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_D04
(882 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
S77554-1|AAB33983.1| 474|Homo sapiens GABAA receptor beta 2 sub... 33 1.4
S77553-1|AAB33982.1| 512|Homo sapiens GABAA receptor beta 2 sub... 33 1.4
S67368-1|AAB29370.1| 474|Homo sapiens gamma-aminobutyric acid A... 33 1.4
BC105639-1|AAI05640.1| 474|Homo sapiens GABRB2 protein protein. 33 1.4
BC099719-1|AAH99719.1| 474|Homo sapiens GABRB2 protein protein. 33 1.4
BC099705-1|AAH99705.1| 474|Homo sapiens GABRB2 protein protein. 33 1.4
BC111802-1|AAI11803.1| 465|Homo sapiens CHRNG protein protein. 30 9.7
>S77554-1|AAB33983.1| 474|Homo sapiens GABAA receptor beta 2
subunit protein.
Length = 474
Score = 33.1 bits (72), Expect = 1.4
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Frame = +3
Query: 60 YYSCYRFLLTCAIASAAECENATSLSLM---IDSLLATYDRESPPD---SKIVVNLTLHL 221
Y+ + F L A A + +++SL+ +D LL YD PD + V + + +
Sbjct: 9 YFGIWSFPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDI 68
Query: 222 RHAN-IRESESTVRILADLQMNWIDKRLSWN 311
+ + E + Q W DKRLS+N
Sbjct: 69 ASIDMVSEVNMDYTLTMYFQQAWRDKRLSYN 99
>S77553-1|AAB33982.1| 512|Homo sapiens GABAA receptor beta 2
subunit protein.
Length = 512
Score = 33.1 bits (72), Expect = 1.4
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Frame = +3
Query: 60 YYSCYRFLLTCAIASAAECENATSLSLM---IDSLLATYDRESPPD---SKIVVNLTLHL 221
Y+ + F L A A + +++SL+ +D LL YD PD + V + + +
Sbjct: 9 YFGIWSFPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDI 68
Query: 222 RHAN-IRESESTVRILADLQMNWIDKRLSWN 311
+ + E + Q W DKRLS+N
Sbjct: 69 ASIDMVSEVNMDYTLTMYFQQAWRDKRLSYN 99
>S67368-1|AAB29370.1| 474|Homo sapiens gamma-aminobutyric acid A
receptor beta 2 subunit protein.
Length = 474
Score = 33.1 bits (72), Expect = 1.4
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Frame = +3
Query: 60 YYSCYRFLLTCAIASAAECENATSLSLM---IDSLLATYDRESPPD---SKIVVNLTLHL 221
Y+ + F L A A + +++SL+ +D LL YD PD + V + + +
Sbjct: 9 YFGIWSFPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDI 68
Query: 222 RHAN-IRESESTVRILADLQMNWIDKRLSWN 311
+ + E + Q W DKRLS+N
Sbjct: 69 ASIDMVSEVNMDYTLTMYFQQAWRDKRLSYN 99
>BC105639-1|AAI05640.1| 474|Homo sapiens GABRB2 protein protein.
Length = 474
Score = 33.1 bits (72), Expect = 1.4
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Frame = +3
Query: 60 YYSCYRFLLTCAIASAAECENATSLSLM---IDSLLATYDRESPPD---SKIVVNLTLHL 221
Y+ + F L A A + +++SL+ +D LL YD PD + V + + +
Sbjct: 9 YFGIWSFPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDI 68
Query: 222 RHAN-IRESESTVRILADLQMNWIDKRLSWN 311
+ + E + Q W DKRLS+N
Sbjct: 69 ASIDMVSEVNMDYTLTMYFQQAWRDKRLSYN 99
>BC099719-1|AAH99719.1| 474|Homo sapiens GABRB2 protein protein.
Length = 474
Score = 33.1 bits (72), Expect = 1.4
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Frame = +3
Query: 60 YYSCYRFLLTCAIASAAECENATSLSLM---IDSLLATYDRESPPD---SKIVVNLTLHL 221
Y+ + F L A A + +++SL+ +D LL YD PD + V + + +
Sbjct: 9 YFGIWSFPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDI 68
Query: 222 RHAN-IRESESTVRILADLQMNWIDKRLSWN 311
+ + E + Q W DKRLS+N
Sbjct: 69 ASIDMVSEVNMDYTLTMYFQQAWRDKRLSYN 99
>BC099705-1|AAH99705.1| 474|Homo sapiens GABRB2 protein protein.
Length = 474
Score = 33.1 bits (72), Expect = 1.4
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Frame = +3
Query: 60 YYSCYRFLLTCAIASAAECENATSLSLM---IDSLLATYDRESPPD---SKIVVNLTLHL 221
Y+ + F L A A + +++SL+ +D LL YD PD + V + + +
Sbjct: 9 YFGIWSFPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDI 68
Query: 222 RHAN-IRESESTVRILADLQMNWIDKRLSWN 311
+ + E + Q W DKRLS+N
Sbjct: 69 ASIDMVSEVNMDYTLTMYFQQAWRDKRLSYN 99
>BC111802-1|AAI11803.1| 465|Homo sapiens CHRNG protein protein.
Length = 465
Score = 30.3 bits (65), Expect = 9.7
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Frame = +3
Query: 81 LLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKI--VVNLTLHLRHANI---RES 245
LL A+ A+ N L+ D L+ YD P + VVN++L L N+ E
Sbjct: 11 LLLLAVCLGAQGRNQEE-RLLAD-LMQNYDPNLRPAERDSDVVNVSLKLTLTNLISLNER 68
Query: 246 ESTVRILADLQMNWIDKRLSWN 311
E + ++M W D RL W+
Sbjct: 69 EEALTTNVWIEMQWCDYRLRWD 90
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,176,752
Number of Sequences: 237096
Number of extensions: 1910270
Number of successful extensions: 3716
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3716
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11270645666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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