Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_D04
(882 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 33 0.003
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 29 0.043
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 29 0.075
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 27 0.23
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 26 0.40
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 25 0.70
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 25 1.2
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 24 2.1
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 24 2.1
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.8
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.8
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 23 2.8
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 23 4.9
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 4.9
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 22 6.5
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 22 8.6
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 22 8.6
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 33.5 bits (73), Expect = 0.003
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +3
Query: 114 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRILADLQ 278
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 279 MNWIDKRLSWNA 314
+ W L+W +
Sbjct: 88 LMWEQSHLTWKS 99
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 29.5 bits (63), Expect = 0.043
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 319 EWGCSTWL-VSSERLWRPDVVLLXAAATTXGDYALRRPWYLXTGSVSW 459
E+G T L V SE +W PD+VL A G + + TG V W
Sbjct: 88 EYGGVTELYVPSEHIWLPDIVLYNNADGEYGVTTMTKAILHYTGKVLW 135
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 28.7 bits (61), Expect = 0.075
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +1
Query: 325 GCSTWLVSSERLWRPDVVLLXAAATTXGDYALRRPWYLXTGSVSW 459
G V SE +W PD+VL A + + TG VSW
Sbjct: 104 GVEMLYVPSENIWLPDIVLYNNADGNYEVTLMTKATLKYTGDVSW 148
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 27.1 bits (57), Expect = 0.23
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +1
Query: 325 GCSTWLVSSERLWRPDVVLLXAAATTXGDYALRRPWYLXTGSVSW 459
G T V SE +W PD+VL A + + TG V W
Sbjct: 91 GVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHHTGKVVW 135
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 26.2 bits (55), Expect = 0.40
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +1
Query: 343 VSSERLWRPDVVLLXAAATTXGDYALRRPWYLXTGSVSW 459
V S+ +WRPD+VL A + TG V W
Sbjct: 101 VPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEW 139
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 25.4 bits (53), Expect = 0.70
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +1
Query: 343 VSSERLWRPDVVLLXAAATTXGDYALRRPWYLXTGSVSW 459
V S+ +WRPD+VL A + + +G V W
Sbjct: 105 VPSDHIWRPDIVLYNNADGNYEVTLMTKATVYYSGLVVW 143
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.6 bits (51), Expect = 1.2
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +1
Query: 343 VSSERLWRPDVVL 381
V S+ +WRPD+VL
Sbjct: 105 VPSDHIWRPDIVL 117
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.8 bits (49), Expect = 2.1
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +3
Query: 141 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 305
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 306 WN 311
WN
Sbjct: 118 WN 119
Score = 21.8 bits (44), Expect = 8.6
Identities = 5/17 (29%), Positives = 13/17 (76%)
Frame = +1
Query: 343 VSSERLWRPDVVLLXAA 393
++ +LW+PD+++ +A
Sbjct: 131 ITPNKLWKPDILMYNSA 147
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.8 bits (49), Expect = 2.1
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +3
Query: 141 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 305
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 306 WN 311
WN
Sbjct: 118 WN 119
Score = 21.8 bits (44), Expect = 8.6
Identities = 5/17 (29%), Positives = 13/17 (76%)
Frame = +1
Query: 343 VSSERLWRPDVVLLXAA 393
++ +LW+PD+++ +A
Sbjct: 131 ITPNKLWKPDILMYNSA 147
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.8
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +3
Query: 231 NIRESESTVRILADLQMNWIDKRLSWN 311
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
Score = 21.8 bits (44), Expect = 8.6
Identities = 5/17 (29%), Positives = 13/17 (76%)
Frame = +1
Query: 343 VSSERLWRPDVVLLXAA 393
++ +LW+PD+++ +A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.8
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +3
Query: 231 NIRESESTVRILADLQMNWIDKRLSWN 311
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
Score = 21.8 bits (44), Expect = 8.6
Identities = 5/17 (29%), Positives = 13/17 (76%)
Frame = +1
Query: 343 VSSERLWRPDVVLLXAA 393
++ +LW+PD+++ +A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.8
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +3
Query: 231 NIRESESTVRILADLQMNWIDKRLSWN 311
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
Score = 21.8 bits (44), Expect = 8.6
Identities = 5/17 (29%), Positives = 13/17 (76%)
Frame = +1
Query: 343 VSSERLWRPDVVLLXAA 393
++ +LW+PD+++ +A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.8
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +3
Query: 231 NIRESESTVRILADLQMNWIDKRLSWN 311
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
Score = 21.8 bits (44), Expect = 8.6
Identities = 5/17 (29%), Positives = 13/17 (76%)
Frame = +1
Query: 343 VSSERLWRPDVVLLXAA 393
++ +LW+PD+++ +A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.8
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +3
Query: 231 NIRESESTVRILADLQMNWIDKRLSWN 311
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
Score = 21.8 bits (44), Expect = 8.6
Identities = 5/17 (29%), Positives = 13/17 (76%)
Frame = +1
Query: 343 VSSERLWRPDVVLLXAA 393
++ +LW+PD+++ +A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.8
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +3
Query: 231 NIRESESTVRILADLQMNWIDKRLSWN 311
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
Score = 21.8 bits (44), Expect = 8.6
Identities = 5/17 (29%), Positives = 13/17 (76%)
Frame = +1
Query: 343 VSSERLWRPDVVLLXAA 393
++ +LW+PD+++ +A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.4 bits (48), Expect = 2.8
Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +3
Query: 120 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 287
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 288 IDKRLSW 308
D RL++
Sbjct: 68 TDPRLAF 74
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 22.6 bits (46), Expect = 4.9
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 352 ERLWRPDVVLLXAAATTXGDYALR 423
+++W+PD+VL A G+Y +R
Sbjct: 106 DKVWKPDIVLFNNA---DGNYEVR 126
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.6 bits (46), Expect = 4.9
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +1
Query: 343 VSSERLWRPDVVLLXAA 393
+ RLW+PDV++ +A
Sbjct: 100 IPPHRLWKPDVLMYNSA 116
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 22.2 bits (45), Expect = 6.5
Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +3
Query: 120 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 287
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 288 IDKRLSW 308
D RL++
Sbjct: 68 TDPRLAF 74
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.6
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Frame = +1
Query: 343 VSSERLWRPDVVLLXAAATTXGDYALRRPWYL-XTGSVSW 459
V R+WRPD +L A + + TG V W
Sbjct: 82 VPYNRVWRPDTILYNNADPQYSSAVINTNVIVSHTGEVVW 121
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 21.8 bits (44), Expect = 8.6
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -2
Query: 137 GQ*CCVFAFCRTSYSTSEEKPVTR 66
G+ CC F T Y + K VT+
Sbjct: 602 GEQCCWHCFNCTQYQIRDHKDVTQ 625
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,458
Number of Sequences: 438
Number of extensions: 3420
Number of successful extensions: 32
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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