Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_D02
         (874 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0183 - 21681673-21682524                                         29   4.9  
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    29   4.9  
01_06_1440 + 37378121-37378958,37379344-37379494,37379567-373799...    29   6.4  

>03_05_0183 - 21681673-21682524
          Length = 283

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 517 SQAFIATLLFDPSMSALPIIAKQNSPS 597
           SQAF A LL D + +A+P++  Q  P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 456 YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 563
           YK F A G  RKV  GIT  + PS+  D+AF S  +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669


>01_06_1440 +
           37378121-37378958,37379344-37379494,37379567-37379936,
           37380021-37380431,37380522-37380820,37380897-37381155,
           37381248-37381497,37381744-37381875,37381936-37382208,
           37383023-37383267
          Length = 1075

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 705 PVRXEPQFRTFGSCPRPNGPV--GAKLPS 785
           PV+  P+  T G+ PRP  P+  G +LPS
Sbjct: 837 PVQPRPRAPTVGAGPRPTAPISHGPRLPS 865


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,024,277
Number of Sequences: 37544
Number of extensions: 468929
Number of successful extensions: 975
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)