Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_D01
(863 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 79 8e-16
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 66 6e-12
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 40 5e-04
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 34 0.023
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 33 0.040
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 32 0.091
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 29 0.64
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 29 0.85
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 27 2.6
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 79.0 bits (186), Expect = 8e-16
Identities = 39/83 (46%), Positives = 49/83 (59%)
Frame = +3
Query: 366 PYXXALXENPXRXVALILTPTRXLASHISEQFXALGASIGVXCALIXGGLDXVXXALLLS 545
P L NP A++L PTR LA ISEQF A+G SIGV +I GG+D V A+ LS
Sbjct: 103 PVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALS 162
Query: 546 MKPHXIIAXXGXLVXHL*QYRGF 614
KPH ++ G L+ HL +GF
Sbjct: 163 KKPHVLVCTPGRLMDHLENTKGF 185
Score = 45.2 bits (102), Expect = 1e-05
Identities = 27/84 (32%), Positives = 35/84 (41%)
Frame = +2
Query: 122 ETNQDSEVDXTPTXNVXXXXENDXXTXKDLGVVYVLCEACE*XXXXXXXXXXXXXXXXAS 301
ET+ S + N T K+LGV+ LCEACE
Sbjct: 22 ETSNSSSEKSSENNNGDSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVL 81
Query: 302 LRXDIXGLAXTRXGXTXAFALPIL 373
+ D+ GLA T G T AFALP++
Sbjct: 82 NKRDVIGLAQTGSGKTAAFALPVI 105
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 66.1 bits (154), Expect = 6e-12
Identities = 32/66 (48%), Positives = 44/66 (66%)
Frame = +3
Query: 387 ENPXRXVALILTPTRXLASHISEQFXALGASIGVXCALIXGGLDXVXXALLLSMKPHXII 566
++P ALILTPTR LA I EQF ALGA++ + ALI GG+D + ++ LS +PH ++
Sbjct: 71 KDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVV 130
Query: 567 AXXGXL 584
A G L
Sbjct: 131 ATPGRL 136
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 39.9 bits (89), Expect = 5e-04
Identities = 21/59 (35%), Positives = 29/59 (49%)
Frame = +3
Query: 408 ALILTPTRXLASHISEQFXALGASIGVXCALIXGGLDXVXXALLLSMKPHXIIAXXGXL 584
AL++ PTR LA I + F + S + I GGL LL+ PH ++A G L
Sbjct: 195 ALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRL 253
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 34.3 bits (75), Expect = 0.023
Identities = 20/68 (29%), Positives = 28/68 (41%)
Frame = +3
Query: 411 LILTPTRXLASHISEQFXALGASIGVXCALIXGGLDXVXXALLLSMKPHXIIAXXGXLVX 590
LIL PTR LA + + + L GGL L +P +IA G +
Sbjct: 334 LILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFID 393
Query: 591 HL*QYRGF 614
H+ +GF
Sbjct: 394 HMRNSQGF 401
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 33.5 bits (73), Expect = 0.040
Identities = 20/57 (35%), Positives = 24/57 (42%)
Frame = +3
Query: 408 ALILTPTRXLASHISEQFXALGASIGVXCALIXGGLDXVXXALLLSMKPHXIIAXXG 578
ALIL PTR LA I + ALG + V C GG L H ++ G
Sbjct: 90 ALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGTPG 146
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 32.3 bits (70), Expect = 0.091
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = +3
Query: 408 ALILTPTRXLASHISEQFXALGASIGVXCALIXGG 512
ALIL+PTR LA I ALG + V C GG
Sbjct: 92 ALILSPTRELAVQIQNVVLALGDHMNVQCHACIGG 126
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 29.5 bits (63), Expect = 0.64
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +3
Query: 411 LILTPTRXLASHISEQFXALGASIGVXCALIXGGLDXVXXALLLSMKPHXIIAXXGXLV 587
LIL PTR LA S+ LG + V + GG + L+ H ++ G ++
Sbjct: 116 LILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVL 174
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 29.1 bits (62), Expect = 0.85
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +3
Query: 408 ALILTPTRXLASHISEQFXALGASIGVXCALIXGGLDXVXXALLLSMKPHXIIAXXGXLV 587
ALIL+P R LA + + I GG+ LLS KP ++A G +
Sbjct: 142 ALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFL 201
Query: 588 XHL 596
HL
Sbjct: 202 -HL 203
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 405 VALILTPTRXLASHISEQFXALGASIGVXCALIXGGL 515
+ L+L PTR LA I ++ G S + + GG+
Sbjct: 197 IVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGV 233
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,060,079
Number of Sequences: 5004
Number of extensions: 22847
Number of successful extensions: 29
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -