Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_C22
         (865 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0452 - 3465140-3466404,3466481-3467056,3467150-3467495           31   1.6  
09_04_0379 - 17094540-17094868,17095354-17095717                       30   2.7  
10_05_0020 - 8094412-8094653,8094692-8095017,8095632-8095798           29   4.8  
01_06_0752 + 31704071-31704787                                         29   4.8  
03_05_0141 - 21210176-21212140                                         29   6.3  
08_02_1407 + 26858677-26859153                                         28   8.4  
06_03_1501 + 30612643-30613310,30613396-30613501,30613732-306139...    28   8.4  
04_04_1019 + 30166514-30166585,30167207-30167841,30168505-301686...    28   8.4  

>03_01_0452 - 3465140-3466404,3466481-3467056,3467150-3467495
          Length = 728

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
 Frame = +2

Query: 68  WVGRDRGCLTFRLTQMLTGHGCFGRYLFKIAGREPTAQCHHCADRDE----DDTAEHTLA 235
           W  R    L  RL ++L G+  F   L   A +   +Q  +C   ++    DD  E  L 
Sbjct: 50  WSLRPPCILCSRLDRLLHGNTWFSEDLICAAHKLEISQLEYCQSHNKLAHSDDLCERCLL 109

Query: 236 RCSGFDE 256
            C+G DE
Sbjct: 110 SCAGLDE 116


>09_04_0379 - 17094540-17094868,17095354-17095717
          Length = 230

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 117 NICVSRKVRHPRSRPTQSARTGRTASTVRRPADG 16
           N  + R++RH   +PT  AR G     + +PA G
Sbjct: 176 NRAIPRRIRHDLEKPTDGARAGGRKRGIGKPAFG 209


>10_05_0020 - 8094412-8094653,8094692-8095017,8095632-8095798
          Length = 244

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 158 AGR-EPTAQCHHCADRDEDDTAEHTLARCSGF 250
           AGR E   Q     D+D+DD AE T ARC G+
Sbjct: 168 AGRAEDEEQRTDDEDQDDDDRAEATAARCPGW 199


>01_06_0752 + 31704071-31704787
          Length = 238

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -1

Query: 478 RTGVFPPPAPGSTATDRC 425
           R GV PPP P STA  RC
Sbjct: 159 RAGVEPPPPPPSTAAARC 176


>03_05_0141 - 21210176-21212140
          Length = 654

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = -2

Query: 138 PKQPWPVNICVSRKVRHPRSRPTQSARTGRTASTVRRPADGSAKL 4
           P  P P   C SR   H   R ++S  T R  S  RR A   + L
Sbjct: 6   PPPPTPTPPCASRDPLHAAPRRSRSPSTSRPPSRHRRTASARSTL 50


>08_02_1407 + 26858677-26859153
          Length = 158

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 242 SNAPVCVPLCHPRRGPRSGGTAPSVP 165
           S  P+C  L H RR P +GG A +VP
Sbjct: 22  SPPPLCRTLRHLRRRPSAGGGAAAVP 47


>06_03_1501 +
           30612643-30613310,30613396-30613501,30613732-30613934,
           30614211-30614502
          Length = 422

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 32  RTVEAVRPVLADWVGRDRGCLTFRLTQMLTGHGCFGRYLFKIAGREPTA 178
           + VE +   LADWV  + G      T   TG  C+G  L  +  ++P+A
Sbjct: 190 KNVEMLSEHLADWVSEEDGKKIVFHTFSNTGWLCYGVILENLQRQDPSA 238


>04_04_1019 +
           30166514-30166585,30167207-30167841,30168505-30168645,
           30169604-30170300
          Length = 514

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 502 AAXLQGPGRTGVFPPPAPGSTATDRCG 422
           AA  Q P    +FPPP   S+ TD CG
Sbjct: 58  AAEWQLPAEPMLFPPPPSLSSTTDGCG 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,818,596
Number of Sequences: 37544
Number of extensions: 275442
Number of successful extensions: 1067
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)