Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_C22
         (865 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ060036-1|AAY43130.1|  900|Homo sapiens polymerase (DNA directe...    35   0.33 
AY136549-1|AAN52116.1|  900|Homo sapiens DNA polymerase N protein.     35   0.33 
AL158068-2|CAM20461.1|  900|Homo sapiens polymerase (DNA directe...    35   0.33 
AL136360-1|CAM16854.1|  900|Homo sapiens polymerase (DNA directe...    35   0.33 

>DQ060036-1|AAY43130.1|  900|Homo sapiens polymerase (DNA directed)
           nu protein.
          Length = 900

 Score = 35.1 bits (77), Expect = 0.33
 Identities = 28/100 (28%), Positives = 36/100 (36%), Gaps = 7/100 (7%)
 Frame = +2

Query: 83  RGCLTFRLTQMLTGHGC-----FGRYLFKIAGREPTA--QCHHCADRDEDDTAEHTLARC 241
           RG +     Q   GHGC      G  L      +P    Q  H A  D++  A    AR 
Sbjct: 245 RGIVVLVKRQAEGGHGCPDAPACGPVLEGFVSDDPCIYIQIEHSAIWDQEQEAHQQFARN 304

Query: 242 SGFDEQRAALVAVIGEDLSLPRIVATMLGSDASWKAMLDF 361
             F   +     +        RIV    G+D SWK + DF
Sbjct: 305 VLFQTMKCKCPVICFNAKDFVRIVLQFFGNDGSWKHVADF 344


>AY136549-1|AAN52116.1|  900|Homo sapiens DNA polymerase N protein.
          Length = 900

 Score = 35.1 bits (77), Expect = 0.33
 Identities = 28/100 (28%), Positives = 36/100 (36%), Gaps = 7/100 (7%)
 Frame = +2

Query: 83  RGCLTFRLTQMLTGHGC-----FGRYLFKIAGREPTA--QCHHCADRDEDDTAEHTLARC 241
           RG +     Q   GHGC      G  L      +P    Q  H A  D++  A    AR 
Sbjct: 245 RGIVVLVKRQAEGGHGCPDAPACGPVLEGFVSDDPCIYIQIEHSAIWDQEQEAHQQFARN 304

Query: 242 SGFDEQRAALVAVIGEDLSLPRIVATMLGSDASWKAMLDF 361
             F   +     +        RIV    G+D SWK + DF
Sbjct: 305 VLFQTMKCKCPVICFNAKDFVRIVLQFFGNDGSWKHVADF 344


>AL158068-2|CAM20461.1|  900|Homo sapiens polymerase (DNA directed)
           nu protein.
          Length = 900

 Score = 35.1 bits (77), Expect = 0.33
 Identities = 28/100 (28%), Positives = 36/100 (36%), Gaps = 7/100 (7%)
 Frame = +2

Query: 83  RGCLTFRLTQMLTGHGC-----FGRYLFKIAGREPTA--QCHHCADRDEDDTAEHTLARC 241
           RG +     Q   GHGC      G  L      +P    Q  H A  D++  A    AR 
Sbjct: 245 RGIVVLVKRQAEGGHGCPDAPACGPVLEGFVSDDPCIYIQIEHSAIWDQEQEAHQQFARN 304

Query: 242 SGFDEQRAALVAVIGEDLSLPRIVATMLGSDASWKAMLDF 361
             F   +     +        RIV    G+D SWK + DF
Sbjct: 305 VLFQTMKCKCPVICFNAKDFVRIVLQFFGNDGSWKHVADF 344


>AL136360-1|CAM16854.1|  900|Homo sapiens polymerase (DNA directed)
           nu protein.
          Length = 900

 Score = 35.1 bits (77), Expect = 0.33
 Identities = 28/100 (28%), Positives = 36/100 (36%), Gaps = 7/100 (7%)
 Frame = +2

Query: 83  RGCLTFRLTQMLTGHGC-----FGRYLFKIAGREPTA--QCHHCADRDEDDTAEHTLARC 241
           RG +     Q   GHGC      G  L      +P    Q  H A  D++  A    AR 
Sbjct: 245 RGIVVLVKRQAEGGHGCPDAPACGPVLEGFVSDDPCIYIQIEHSAIWDQEQEAHQQFARN 304

Query: 242 SGFDEQRAALVAVIGEDLSLPRIVATMLGSDASWKAMLDF 361
             F   +     +        RIV    G+D SWK + DF
Sbjct: 305 VLFQTMKCKCPVICFNAKDFVRIVLQFFGNDGSWKHVADF 344


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,706,431
Number of Sequences: 237096
Number of extensions: 1344312
Number of successful extensions: 4393
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4387
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 11039988564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)