Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_C13
         (879 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0734 + 31569017-31569358,31569832-31569906,31570009-315701...    30   2.8  
03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171     28   8.6  
01_07_0206 + 41990251-41992032,41992131-41992361                       28   8.6  
01_06_1724 - 39452858-39454309                                         28   8.6  

>01_06_0734 +
           31569017-31569358,31569832-31569906,31570009-31570159,
           31570716-31570784,31570864-31571036,31571474-31571611,
           31571747-31571872,31571951-31572049,31573175-31573298,
           31573465-31573528,31573798-31573852,31573951-31574075,
           31574228-31574301,31574436-31574485,31574722-31574808,
           31574897-31574947,31575025-31575108,31575400-31575498
          Length = 661

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 21/50 (42%), Positives = 30/50 (60%)
 Frame = +1

Query: 43  TGLLVEPLFSISSRGNPLLPTTSHSWSPARLCPLTPPI*LIRQRYSPVAA 192
           TG+L+  L S +SR +P+ PT++   SPA   P   P  L+R+ YS  AA
Sbjct: 3   TGMLLRGLRSAASRTSPVFPTSAS--SPA---PYVSP--LLRRLYSAAAA 45


>03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171
          Length = 1054

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 90  PAPPHDLSQLESRKALSSHPSYLAYSSTIFPGRRRPI*LYSP 215
           P P  + +++  +K +  +PS L+ S   F GR+    LYSP
Sbjct: 240 PRPSKETARMIKKKLVEENPSVLSGSQPAFDGRKN---LYSP 278


>01_07_0206 + 41990251-41992032,41992131-41992361
          Length = 670

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 233 YSSRNKSLIAKKLQSAALALGQWFRKWR 316
           Y + +K+ ++K+ + + L LGQW   WR
Sbjct: 272 YVNMDKTWLSKQAEMSTLQLGQWKPSWR 299


>01_06_1724 - 39452858-39454309
          Length = 483

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 457 QVPGRYPGCIDDIPPAYKISP*PCRVY 537
           QVPG++P CI     AY++ P PC  Y
Sbjct: 333 QVPGQHPPCI-----AYQMPPPPCLAY 354


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,035,193
Number of Sequences: 37544
Number of extensions: 540176
Number of successful extensions: 1532
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1532
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)