Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_C07
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    31   0.30 
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe...    30   0.52 
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    27   3.6  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    27   3.6  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   4.8  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    27   4.8  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 241 VRVHRADTGRSSNELDRQTTELERRGMGL-QHLAG 342
           +R H+   GR+  ELDR+ T+L++R   L Q + G
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52


>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -1

Query: 655 GXAPALDRSVTFHAPDSNILYILLSITEIHFVTIVHPRTELERASL 518
           G  PA   S+ FH PDS++L +  S   +H   +    + LER  L
Sbjct: 230 GSLPAQIYSIAFH-PDSSLLTVTSSTQTVHIFRLKEVYSNLERQGL 274


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = +1

Query: 715 DXPRXXPGXPAPXSPXXAPXFGXXXXXLPPAXXXPLP 825
           + PR  PG PAP     A         LPP    P P
Sbjct: 99  EEPRKLPGVPAPQKQSEASSVNSSTEKLPPPPSYPGP 135


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = -2

Query: 642  HWTDPSHSTLLTRTY--CIFFCQSRKSISSLLCILEPNLNVQVCMSLGQLSNCIEIGVLM 469
            HW   + S L+ + Y  C+  C++   + + +C    NL  QV      L++  EIG  +
Sbjct: 928  HW---AISLLIFQLYDPCLEVCKTAVKVLNEVCARNENLLAQVVQLQPSLAHLGEIGSPL 984

Query: 468  SKRFIQET 445
              RF+  T
Sbjct: 985  LLRFLATT 992


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 319 FPCVPTQSFVDPIHLKICQYPHGGL 245
           F  +P Q+F    H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 419 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHN 556
           RA +++   +  +KR DI    +   DNW ND+  C  + G  +H+
Sbjct: 588 RAVIAHMLELDPVKRYDIHRVFA---DNWINDISMCHMENGKVIHS 630


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,198,619
Number of Sequences: 5004
Number of extensions: 64893
Number of successful extensions: 170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)